RNA id: TU679615



Basic Information


Item Value
RNA id TU679615
length 202
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G596354
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30938944 ~ 30939145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTTGATGACCAGCCTCTCTAAGCACTTCATGATAACCGAGGTGAGCGCGAAGGGGCAATAGTCATTTGGGCATGTCACCTTGTTTTTCTTGGGCACTGGAACGATGGTGGTCTCCTTAAAGCAGGTGTGGACTACAGCCTGGGACAAGGACCGCTTGAAGATGTCCGAGAAGATGCCCAccagctggtcagcacacactc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679610 lncRNA downstream 5096 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 15206 30923457 ~ 30923738 (-) True G596335
TU679434 lncRNA downstream 27761 30910951 ~ 30911183 (-) True LOC118965351
TU679432 lncRNA downstream 30044 30908650 ~ 30908900 (-) True G596174
TU679427 lncRNA downstream 34190 30904477 ~ 30904754 (-) True G596169
TU679617 lncRNA upstream 1934 30941079 ~ 30941381 (-) True G596356
TU679683 lncRNA upstream 137753 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 159866 31099011 ~ 31107231 (-) True G596441
TU679736 lncRNA upstream 200328 31139473 ~ 31139786 (-) True G596471
TU679761 lncRNA upstream 219401 31158546 ~ 31158821 (-) True G596495
LOC118965351 mRNA downstream 26797 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 252839 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 327725 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 345093 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 544153 30313379 ~ 30394791 (-) False LOC110527641
XM_021609062.2 mRNA upstream 10332 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 50714 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 52693 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 88173 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 137742 31076887 ~ 31097917 (-) False LOC110527652
TU679613 other downstream 2330 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 75624 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 94320 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 327676 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 628010 30310171 ~ 30310934 (-) True G595364
TU679696 other upstream 139367 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1479045 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2298902 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2299002 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2736934 33676079 ~ 33677297 (-) False G599788

Expression Profile