RNA id: TU679617



Basic Information


Item Value
RNA id TU679617
length 303
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G596356
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30941079 ~ 30941381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCTCTACTGACATCCTGAGCTGCACACTGGAAGGACAGCACATTCTTTATTAAAATCACTCTATGAGAACAACCTGCAGGAGGCCTTGTCTGAGACGGTCTCTCTTCTCATAATCAGCATCACCACTCCGATGACAACCGCAGAGTCAGAGAGAAATCTTTCCACCCTTAAAAGGATAAAAATCTTCACACGCAACTCCATGGGCCAGAAAATGTTAAAtgcattggccatgctgtcaatccatcATGACTTCATCcaaagaatgccagactttgatgacaaagtaaTTGAGAAGTTTAATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU679615 lncRNA downstream 1934 30938944 ~ 30939145 (-) True G596354
TU679610 lncRNA downstream 7231 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 17341 30923457 ~ 30923738 (-) True G596335
TU679434 lncRNA downstream 29896 30910951 ~ 30911183 (-) True LOC118965351
TU679432 lncRNA downstream 32179 30908650 ~ 30908900 (-) True G596174
TU679683 lncRNA upstream 135517 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 157630 31099011 ~ 31107231 (-) True G596441
TU679736 lncRNA upstream 198092 31139473 ~ 31139786 (-) True G596471
TU679761 lncRNA upstream 217165 31158546 ~ 31158821 (-) True G596495
TU680596 lncRNA upstream 631804 31573185 ~ 31573437 (-) True G597314
LOC118965351 mRNA downstream 28932 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 254974 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 329860 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 347228 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 546288 30313379 ~ 30394791 (-) False LOC110527641
XM_021609062.2 mRNA upstream 8096 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 48478 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 50457 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 85937 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 135506 31076887 ~ 31097917 (-) False LOC110527652
TU679613 other downstream 4465 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 77759 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 96455 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 329811 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 630145 30310171 ~ 30310934 (-) True G595364
TU679696 other upstream 137131 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1476809 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2296666 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2296766 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2734698 33676079 ~ 33677297 (-) False G599788

Expression Profile