RNA id: TU679455


Basic Information

Item Value
RNA id TU679455
length 2354
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G596197
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30989872 ~ 30992267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTATTCAACATTTATTTGTCATTTTAAAAAACATTGAAGATTCTCAAAATATAAATAcgtctctcccacacacacacaataagctGTACacatgcgctcacaCACACACTTTCACTCAACACAGGCCCCTGAATTGGATCTCAAAATGTGCAATCACAACAAAAGAACAATAAACTGCATCATTTGGTCTCCTTAAGTAGTCCTCTCAACGACGGTCAGAGATTCCATCaatctggggtgtattcactaggaaccaaacgagACAACTTGGAGTGACCTAAATAAATTTTCAAATAAGACTCATTTCAGTTGCAAAAAGTCTTCTATAGCAAAACTttttgcactaatgaatacacccttgaACACACATTAAAAAACACATTCAACCTGCTCGGGTCCAATGTCATAgcaaataattatgtaaatgaagGGTCCATGATTGATCAAAGAGATTAGAAATTAAAAGGATGGGATAAACATGTCCATGACAGTACATTTAGGGTAGATGAGAATGGCAAAAAaggtatatacactgaacaaaaataagcgcaacatgtaaagtgttggtcccatgtttcatgagctgaaatacaatATCCCAGAAATAaggacaaaaagcttatttctctcaaatgttgtgcacaaattggtttatGTCACTgtttgagcatttctcctttgccaagataatatccatccacctgacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtacaacGTGTGCTGGGGAAAATTAAAGGCCActtaaaatgtgcaattttgttacattatacaAAACCACAGAtctctcaagttgagggagtgtgcaattggcatgatgactgcaggaatgtccaccagagcagttgccaaaaaaatgtaaagttcatgttttagagaatttggcagtatatcCGACCGGCCTcgcaaccacgccagcccaggacctccacatccagcttcttcacctgtggaatcgtctgagaccagcagcccagacagctaatgaaactgtaggtttgcacaaccgaagaatttctgcacaaactgtcggaaaccgtctcagggaagctcatctgcatgcgtGTCATCCTCACCacggtcttgacctgactgcagtttggcgttgtaactgacttcagtggccactggcacgctggagaagtgtgctcttcatggatgaatcccgatttcaactgtaccgggcagatgtcaGACAGCGTGTATGCCGTTATGtcggtgagtggtttgctgagtgccccatggtggcggtggggttatggtttcggcaggcataagctacagacaactaaCACAACTGCTTTTTAAAGCAGTGATGAAGACCTTGAGGCTGATACATAaagcttaataaagagcagtgatactagcaagaacATTGCGCAGGTTTCTTCTTTTTTCTCACCGATGGCAAGTTGAATGtcatgacaagatcctgaggtccattgtcactcctgtttcagcatgataatgcacagccccattcctggaagctgaacatgtcccagttcttccatggcctgcactcagacatgtcacccgttgtGCCCGTTTGGGATGCCCTGGATCAAGGTttaagacagcgtgttccagttcctgcgaatatccagtaactttgcatagctattgaagaggagtgggacaacattcctcgGACTgcaatcaacagcttgatcaactctatgcgaaagaGATGTTGCTCTACAtgatgcaaatggtggtcacaccatatactgactggttctgatccacgcccctacctttaagGTATCTCTGACCAGATGCATAtcagtattcccagtcatgtgaaatccagattagcgcctaatgaatttatttttgaTTGACTTTTCCTTATATGTACTGTAAATCAGtacaatctttgaaattgttccatgttgtgtttatatttgttaCGTGTATATGGGAAGCAACTAATAGATACAATGTGCTTGGACTGGGGATGAATCAAATGTGATCAAAAACATCTGTTAAATCACTCTTCTGTCCAGTGATTTGGTCTTTCATTCTTTGTATGGATAAGGgatgtaaaaacaaaaataactAAATGGGAGACTTAGCGGTCAAATTTCCTTCCAATATTGAGGGAGATTATTCTGATTTTGTTTATTGCCATGTTAGTTAGCATCAGTTTGTAGTCACTTCCCTTTTACAGATAGGCCCTTCCGGAGAATGATGAACAGTCTGGTTTGCCCTTGTGCAAAACACTCCACTAAGATGCCTTGCCCAgttcaatcttcttctggatggCTTTTGCCGAGTGGTATATCAAGGAATCAATTAGTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679465 lncRNA upstream 53423 30936185 ~ 30936449 (+) True G596207
TU679442 lncRNA upstream 74422 30915249 ~ 30915450 (+) True G596184
TU679423 lncRNA upstream 87624 30902003 ~ 30902248 (+) True G596165
TU679421 lncRNA upstream 88928 30900496 ~ 30900944 (+) True G596163
TU679418 lncRNA upstream 90353 30899207 ~ 30899519 (+) True G596160
TU679525 lncRNA downstream 32354 31024621 ~ 31025043 (+) True G596265
TU679588 lncRNA downstream 135054 31127321 ~ 31132421 (+) True G596327
TU679737 lncRNA downstream 148006 31140273 ~ 31140492 (+) True G596472
TU680074 lncRNA downstream 585257 31577524 ~ 31577843 (+) True G596804
TU680075 lncRNA downstream 585679 31577946 ~ 31578145 (+) True G596805
XM_036983140.1 mRNA upstream 135056 30733583 ~ 30854816 (+) False LOC110527647
XM_021609056.2 mRNA upstream 135056 30733584 ~ 30854816 (+) False LOC110527647
XM_021609059.2 mRNA upstream 135056 30733585 ~ 30854816 (+) False LOC110527647
XM_021609060.2 mRNA upstream 135056 30733585 ~ 30854816 (+) True LOC110527647
NM_001160702.1 mRNA upstream 353864 30623484 ~ 30636008 (+) True if2b
XR_005052703.1 mRNA downstream 60359 31052626 ~ 31071618 (+) True LOC118965377
XR_005052704.1 mRNA downstream 79475 31071742 ~ 31073140 (+) True LOC118965378
XR_005052705.1 mRNA downstream 81078 31073345 ~ 31074263 (+) True LOC118965379
XM_021609068.2 mRNA downstream 212237 31204504 ~ 31716227 (+) False LOC110527653
XM_036983142.1 mRNA downstream 404023 31396290 ~ 31713376 (+) False LOC110527653
TU679426 other upstream 85985 30903179 ~ 30903887 (+) True G596168
TU676845 other upstream 957251 30031959 ~ 30032621 (+) True G593774
TU676564 other upstream 1460962 29528027 ~ 29528910 (+) True G593513
TU676195 other upstream 1626521 29329672 ~ 29363351 (+) True LOC110527619
TU676297 other upstream 1925280 29059698 ~ 29064592 (+) True G593283
TU679558 other downstream 89454 31081721 ~ 31082290 (+) True G596297
TU680885 other downstream 1017047 32009314 ~ 32009930 (+) True LOC110531742
TU682386 other downstream 2243546 33235813 ~ 33236636 (+) True G599004
TU682518 other downstream 2298259 33290526 ~ 33295528 (+) True G599123
TU683457 other downstream 2974022 33966289 ~ 33966755 (+) True G600013

Expression Profile