RNA id: TU679706


Basic Information

Item Value
RNA id TU679706
length 626
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G596441
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 31099011 ~ 31107231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacggttacagaagtcgtcaaaagagagcgcctggggaataggagtggagctaggcactgcagggcctggattcacctctacatcgccagaggagcataggaggagtagaataagggtgcgactaaaagcaataagaattggtcgtctagaacgtctggaacagagagtaaaaggaggtttctgggggcgataaaatagcatcaaggtataatgtacagacaaaggtaaggtaggatgtgaatacagtggaggtaaacctaggtattgagtgatgaagagagagatattgtctctagaaacatcattgaaaccaggagatgtcattgcatgtgtgggtggtggaactaataggttggataaggtatagtgagcaggactagaggctctacagtgaaataagccaataaacactaaccagaacagcaatggacaaggcatattgacattaaggagaggcatgcttagtcgagtgatcaaaagggtccagtgagtagtgaggttggttggggtcacggcgattcagacagctagccgggccatcggtagcaagctagcataggatggaggtctgtttttagccaccttgtgcgtttccgtcggtaggattagtggggttctgTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679683 lncRNA downstream 17163 31076898 ~ 31081848 (-) True LOC110527652
TU679617 lncRNA downstream 157630 30941079 ~ 30941381 (-) True G596356
TU679615 lncRNA downstream 159866 30938944 ~ 30939145 (-) True G596354
TU679610 lncRNA downstream 165163 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 175273 30923457 ~ 30923738 (-) True G596335
TU679736 lncRNA upstream 32242 31139473 ~ 31139786 (-) True G596471
TU679761 lncRNA upstream 51315 31158546 ~ 31158821 (-) True G596495
TU680596 lncRNA upstream 465954 31573185 ~ 31573437 (-) True G597314
TU680608 lncRNA upstream 476561 31583792 ~ 31583995 (-) True G597326
TU680611 lncRNA upstream 478526 31585757 ~ 31585995 (-) True G597329
XM_021609066.2 mRNA downstream 1094 31076887 ~ 31097917 (-) False LOC110527652
XM_021609065.2 mRNA downstream 61140 31027318 ~ 31037871 (-) True LOC110527651
XM_021609063.2 mRNA downstream 93848 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA downstream 93848 30991838 ~ 31005163 (-) True LOC110527650
XM_021609062.2 mRNA downstream 145352 30949477 ~ 30953659 (-) True LOC110527649
XM_036983152.1 mRNA upstream 968651 32075882 ~ 32174114 (-) False LOC110527654
XM_036983151.1 mRNA upstream 968651 32075882 ~ 32174198 (-) False LOC110527654
XM_036983149.1 mRNA upstream 968651 32075882 ~ 32174535 (-) False LOC110527654
XM_036983147.1 mRNA upstream 968651 32075882 ~ 32174536 (-) False LOC110527654
XM_036983148.1 mRNA upstream 968651 32075882 ~ 32174536 (-) False LOC110527654
TU679696 other downstream 19693 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 162397 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 235691 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 254387 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 487743 30604175 ~ 30611268 (-) True LOC110527646
TU681689 other upstream 1310959 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2130816 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2130916 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2568848 33676079 ~ 33677297 (-) False G599788
TU683219 other upstream 2568939 33676170 ~ 33677297 (-) False G599788

Expression Profile