RNA id: TU680842



Basic Information


Item Value
RNA id TU680842
length 237
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G597555
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 31946476 ~ 31946712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAATAGAAAATATTGTATGGTttagagggatgaggcaaaaggaatggcaaataagtctggctgcacaaccgattggcaaacatactACAAATAGAGATGGTGCCGGAGATGATGGCTGCCGTCttattggctcttaaccaactgtgctatttggtttgttttttcacattgtttgtaacttattttgtacataatgttgctgctaccatctcttatgaccaaaaagagcttctggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU680841 lncRNA upstream 7986 31938202 ~ 31938490 (+) True G597554
TU680171 lncRNA upstream 161364 31727662 ~ 31785112 (+) True G596899
TU680154 lncRNA upstream 253192 31692916 ~ 31693284 (+) True G596883
TU680075 lncRNA upstream 368331 31577946 ~ 31578145 (+) True G596805
TU680074 lncRNA upstream 368633 31577524 ~ 31577843 (+) True G596804
TU680855 lncRNA downstream 18497 31965209 ~ 31997331 (+) True G597566
TU680918 lncRNA downstream 66606 32013318 ~ 32013526 (+) True G597629
TU680921 lncRNA downstream 75023 32021735 ~ 32021943 (+) True G597632
TU680935 lncRNA downstream 86235 32032947 ~ 32033201 (+) True G597646
TU681100 lncRNA downstream 394883 32341595 ~ 32352331 (+) True G597793
XM_021609068.2 mRNA upstream 230249 31204504 ~ 31716227 (+) False LOC110527653
XM_036983146.1 mRNA downstream 60311 32007023 ~ 32013203 (+) False LOC110531742
XM_036983145.1 mRNA downstream 60619 32007331 ~ 32013203 (+) False LOC110531742
XM_036983154.1 mRNA downstream 250254 32196966 ~ 32257394 (+) True LOC110528942
XM_021609073.2 mRNA downstream 398936 32345648 ~ 32407998 (+) False LOC110527657
XM_021609074.2 mRNA downstream 398936 32345648 ~ 32407998 (+) False LOC110527657
TU679558 other upstream 864186 31081721 ~ 31082290 (+) True G596297
TU679426 other upstream 1042589 30903179 ~ 30903887 (+) True G596168
TU676845 other upstream 1913855 30031959 ~ 30032621 (+) True G593774
TU676564 other upstream 2417566 29528027 ~ 29528910 (+) True G593513
TU676195 other upstream 2583125 29329672 ~ 29363351 (+) True LOC110527619
TU680885 other downstream 62602 32009314 ~ 32009930 (+) True LOC110531742
TU682386 other downstream 1289101 33235813 ~ 33236636 (+) True G599004
TU682518 other downstream 1343814 33290526 ~ 33295528 (+) True G599123
TU683457 other downstream 2019577 33966289 ~ 33966755 (+) True G600013
TU683953 other downstream 2812635 34759347 ~ 34759658 (+) True G600431

Expression Profile