RNA id: TU681094


Basic Information

Item Value
RNA id TU681094
length 3109
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G597787
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32414366 ~ 32417474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccataacatgatgcagcccccaacggatgtgttatggctttacaccccctgctataatgtggctAAATAGTTACttttctaacagaacacagagggtgttctttaatggaagcctctcaaatataatccagttagaatcaggaattccccagggtagctgtttaggccccttgcttttttcaatttttattaatgacatgccactgactttgagcaaagtcagagtttctatgtatgcggatgacttaGCACTATatacgtcagctactacagcaactgaaatgtctgcaacactcaacaaagagctgcagttcgtttcagagtgggtggcaaggaataagttagccctaaatatttccaaaactaaaagcattgtatttggaacaaaacactcactacaCCCTAAACCTCAATAagtcttgtaataaataatgtggaaattgagcaagttgagatgactaaactgcttggagtaacaccagattgtaaactgtcatggtcaaaaaatattgatgcagtagtagctaagatgggagaagtctgtctataataaagtgatgctttgccttcttaacaacactatcaacaaggcaggtcctacagaccctagttttgtcacaccttgactactgttcagtcgtgtggtcaggtgccacaaaaaaggacgtaggaaaattgcaattggctcagaacagggcagcacagcagGCCCTTGggtgtacacagagagctaatattaatcatatgcatgtcaatctctcctggctgaaagtggaggagagatagacttcatcactacttttatttatgagaggtattgacatgttgagtgcaccgagctgtctgtctagcacatagctcggacacccatgcataccccacaagacatgccacaagaggtctcttcacagtccccaagtccagaacagactattggAGGCAcatagtactacatagagccatgattacatggaactctattccacatcaagtaactgacacaagcagtaaaatttgatttaaaaaaacagattaaaaaacagacacatgcatatatacacacacacacacacatagtaacatatgcactatacatacacatggatttagtaatatagatagatatatggtagtggtggagtaggggcctgagggcacacagtgtgttgtgaagtctgtgaatgtattgtaatgttttaaaattgtattaactgccttaattttgctgcaccccaggaagagtagctgctgctttggcagctaatggggatccataataaatacaaatacagatgaagtagtcattcaaaaagcatgtttaacactattattgcacacagagtgagtccatggaattagtatgtgacttgttaagcacatttttactcctgaacttatgtaggcttgccataacaactTACTTATTGACTCgggacatttcagctttaaatttttattaatttgtaaaaaggaaaaacataattccactttggcatTGTATGTAGGCCATTGACAAAAAATATCtcaattttatccattttaaattcaggctgtaacacaacaaattgtggaaaaagttttaggggctcccgagtggcgcagtggtctaaggcactgcatctcagtcctagaggtgtcactacagaccctggtttgattccaggctgtttcacaactggccgtgatttggagttccataggacggcgcacaattgtcccagcatcatccgggttacgGTTTGGCCGTGgcagggcgtcattgtaaataggaatttgttcttaacgtacttgcctagttaaaataaaggttaaataaacattgtctgaatactttctgaaggcactgtaagtacaaTATTGTAAGATACAATACACGATTACAAGACGGAatgtattcagatcccttgactttctccacattttgttacgttacagccttattataaaatttattaaataaaaaaaagcctcgtcaatcttcacacaataccccataatgaaaaagcaaaaactgttttttagaaatatttgcaaatgttagtttttttaaacagatactttatttacataagtatttagatgccaaattgagctcaggtgcatcctgtttccattgatcagctTTTTGATCAGCCTAGAAACATTCCATTGATGTTTCTAAAaaatgattggagtccacctgtgataaattttAATGGCACACACTGTCTAAAAAGTTTTACagagttgaccgtgcatgtcagagcaaaaaacaagctaTGAGgtaaaaggaattgtccgtagagctcagaaacaggattgtatcgaggcacagatctggggaagggtaccagaaaatgtctgcagcattgaaagtcccccaaaacacagtgtcctccatcattcttaaatggaagacgtttggaaccactaaAAAATACTCTTCCcagagccaaactgagcaatcgagggagaagcgccaataacctgatggtcactctgacagaactccagagttcctctgtggagatgggagaatcttccggaaggacaaccatctctgcaggactccaccaatcaggtctttatggtagtagagtggccagacagaagccgctcctcagtaaaaggcacatgacagtccacttggagtttgccaaaaggcacaagattctctgctctgatgaaaccaagattgaactctttggcctgaatgccagggactgggagattagtcaggatcaagagaaagatgaacggagcaaagtacagagagatccttcatgaaaacctgctccagagcgctcaggacttcagactggggcgaagtttcaccttccaacaggacaatgacccaggagtggcttcaggaaaagtctcaatgtccttgagtggcccaaccagagcccggacttgaacccaatctaacatctctggagagacctgaaaatagctgtgcagcaatgctccccatccaacctgactgagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccatggttgtggcgtcatacccaagaagactcaaggctgtaatctcttTCAAAAGTGtgtcaacaaagtgctgagtaaagggtctgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU681101 lncRNA upstream 779 32412729 ~ 32413587 (+) True G597794
TU681105 lncRNA upstream 2012 32411928 ~ 32412354 (+) True G597798
TU681100 lncRNA upstream 62035 32341595 ~ 32352331 (+) True G597793
TU680935 lncRNA upstream 381165 32032947 ~ 32033201 (+) True G597646
TU680921 lncRNA upstream 392423 32021735 ~ 32021943 (+) True G597632
TU681097 lncRNA downstream 167 32417641 ~ 32418797 (+) True G597790
TU681225 lncRNA downstream 13707 32431181 ~ 32431414 (+) True G597908
TU681231 lncRNA downstream 22203 32439677 ~ 32439878 (+) True G597914
TU681236 lncRNA downstream 27644 32445118 ~ 32445345 (+) True G597919
TU681238 lncRNA downstream 30695 32448169 ~ 32448399 (+) True G597921
XM_021609073.2 mRNA upstream 6368 32345648 ~ 32407998 (+) False LOC110527657
XM_021609074.2 mRNA upstream 6368 32345648 ~ 32407998 (+) False LOC110527657
XM_021609075.2 mRNA upstream 6368 32345648 ~ 32407998 (+) False LOC110527657
XM_021609076.2 mRNA upstream 6368 32345648 ~ 32407998 (+) True LOC110527657
XM_036983154.1 mRNA upstream 156972 32196966 ~ 32257394 (+) True LOC110528942
XM_021609082.2 mRNA downstream 50539 32468013 ~ 32480794 (+) False nfs1
XM_036983155.1 mRNA downstream 50539 32468013 ~ 32480794 (+) True nfs1
XM_021609079.2 mRNA downstream 63462 32480936 ~ 32492404 (+) False rbm12
XM_021609080.2 mRNA downstream 63468 32480942 ~ 32492404 (+) False rbm12
XM_021609081.2 mRNA downstream 63478 32480952 ~ 32492404 (+) True rbm12
TU680885 other upstream 404436 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 1332076 31081721 ~ 31082290 (+) True G596297
TU679426 other upstream 1510479 30903179 ~ 30903887 (+) True G596168
TU676845 other upstream 2381745 30031959 ~ 30032621 (+) True G593774
TU676564 other upstream 2885456 29528027 ~ 29528910 (+) True G593513
TU682386 other downstream 818339 33235813 ~ 33236636 (+) True G599004
TU682518 other downstream 873052 33290526 ~ 33295528 (+) True G599123
TU683457 other downstream 1548815 33966289 ~ 33966755 (+) True G600013
TU683953 other downstream 2341873 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 2553654 34971128 ~ 34971405 (+) True G600531

Expression Profile