RNA id: TU681691


Basic Information

Item Value
RNA id TU681691
length 534
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G598355
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32420321 ~ 32421072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcttcttgccactcttctataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgagagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccagatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctcatgacgcttttaacggacctctgagactatcacagtgcaggtgcagttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU681692 lncRNA downstream 4035 32415767 ~ 32416286 (-) True G598356
TU681636 lncRNA downstream 87289 32319013 ~ 32333032 (-) True G598304
TU681621 lncRNA downstream 153744 32261173 ~ 32266577 (-) True bc10
TU681620 lncRNA downstream 154159 32261173 ~ 32266162 (-) False bc10
TU680954 lncRNA downstream 378245 32041868 ~ 32042076 (-) True G597665
TU681731 lncRNA upstream 12751 32433605 ~ 32433947 (-) True G598394
TU681738 lncRNA upstream 17765 32438619 ~ 32438825 (-) True G598398
TU681749 lncRNA upstream 31045 32451899 ~ 32452191 (-) True G598409
TU681751 lncRNA upstream 33635 32454489 ~ 32454706 (-) True G598411
TU681758 lncRNA upstream 42285 32463139 ~ 32463377 (-) True G598418
XM_021609072.2 mRNA downstream 97163 32305811 ~ 32323158 (-) True psmf1
XM_021609071.2 mRNA downstream 127070 32288164 ~ 32293251 (-) True LOC110527655
XM_036981859.1 mRNA downstream 153676 32261170 ~ 32266645 (-) False bc10
XM_021608238.2 mRNA downstream 153964 32261170 ~ 32266357 (-) False bc10
XM_021609077.2 mRNA upstream 810 32421664 ~ 32424650 (-) True si:ch211-15p9.2
XR_005052736.1 mRNA upstream 123104 32543958 ~ 32544012 (-) True LOC118965410
XM_021609090.2 mRNA upstream 371326 32792180 ~ 32798898 (-) False LOC110527664
XM_021609091.2 mRNA upstream 371326 32792180 ~ 32799074 (-) False LOC110527664
XM_021609093.2 mRNA upstream 371326 32792180 ~ 32799450 (-) False LOC110527664
TU681689 other downstream 173 32418190 ~ 32420148 (-) True G598354
TU679696 other downstream 1341003 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 1483707 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 1557001 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 1575697 30844181 ~ 30844624 (-) True G596094
TU682450 other upstream 817193 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 817293 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 1255225 33676079 ~ 33677297 (-) False G599788
TU683219 other upstream 1255316 33676170 ~ 33677297 (-) False G599788
TU683321 other upstream 1349196 33770050 ~ 33774614 (-) True LOC110527679

Expression Profile