RNA id: TU682559



Basic Information


Item Value
RNA id TU682559
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G599164
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33364131 ~ 33364371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcctgtttgtttgttcctttgtagttttacttagttttcactcagtcatattcacacacacagattcatgcatccctgcactttacatacaccttacattatgatactttcacacctcattcctttttctttgtttaaagttaatagttTTGGTTTACAATAAataacctttttgattggcctatacctgttgttcgtgtcccctcatttttgccacaggctatgagcTGGCCTGTGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU682558 lncRNA upstream 1425 33362356 ~ 33362706 (+) True G599163
TU682493 lncRNA upstream 1963 33344847 ~ 33362168 (+) True G599098
TU682476 lncRNA upstream 113628 33249996 ~ 33250503 (+) True G599082
TU682389 lncRNA upstream 123493 33240275 ~ 33240638 (+) True G599007
TU682387 lncRNA upstream 124343 33237383 ~ 33239788 (+) True G599005
TU682566 lncRNA downstream 7668 33372039 ~ 33372279 (+) True G599171
TU682572 lncRNA downstream 14348 33378719 ~ 33378931 (+) True G599177
TU682575 lncRNA downstream 17683 33382054 ~ 33382312 (+) True G599180
TU682731 lncRNA downstream 238801 33603172 ~ 33603497 (+) True G599332
TU682775 lncRNA downstream 300333 33664704 ~ 33665016 (+) True G599376
XM_021611113.2 mRNA upstream 67055 33291706 ~ 33297076 (+) True LOC110528943
XM_021609100.2 mRNA upstream 148219 33205314 ~ 33215912 (+) True sdc4
XM_021609094.2 mRNA upstream 484389 32848895 ~ 32879742 (+) True map1lc3a
XM_021609087.2 mRNA upstream 649724 32649547 ~ 32714407 (+) False unm_sa1614
XM_021609104.2 mRNA downstream 135049 33499420 ~ 33562457 (+) False LOC110527673
XM_021609106.2 mRNA downstream 135049 33499420 ~ 33562457 (+) False LOC110527673
XM_021609107.2 mRNA downstream 135049 33499420 ~ 33562457 (+) False LOC110527673
XM_021609109.2 mRNA downstream 135049 33499420 ~ 33562457 (+) False LOC110527673
XM_036983159.1 mRNA downstream 135049 33499420 ~ 33562457 (+) False LOC110527673
TU682518 other upstream 68603 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 127495 33235813 ~ 33236636 (+) True G599004
TU680885 other upstream 1354201 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 2281841 31081721 ~ 31082290 (+) True G596297
TU679426 other upstream 2460244 30903179 ~ 30903887 (+) True G596168
TU683457 other downstream 601918 33966289 ~ 33966755 (+) True G600013
TU683953 other downstream 1394976 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 1606757 34971128 ~ 34971405 (+) True G600531
TU685500 other downstream 3209516 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 3725253 37089624 ~ 37090756 (+) True G602295

Expression Profile