RNA id: TU683218


Basic Information

Item Value
RNA id TU683218
length 1319
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G599788
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33674546 ~ 33677297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atactttcgcaaggcactgtatgacccAGGAGAAACTGAATTTAAATTCAATAGATAGTACCTCAGCCAGAGTTGAATGCATGTGCCACAATAAAAAACATATATACGGGCATAGCTGATGTTAATGCTTGATTTCAAGAAAACGTCAAGTTTTATGCACATATTTGGAATTTGTTTCTGAATTATGTCATTTTAGAGATATTACAATGAGGTTTGGTTAAAAGATGTTTGAAAAATTTAAGTGAAACTGTTTGTTTTGAACCATGGTGCACTTCGTTCATTGTTATTCACTGTACAGTTACTTCTCTATTTTTGTTCATAACTCATCGTCATCATTCCATAGAGCAGGTTGTACTTATTTTTTTAACATTCAAACTTTTGGTATACGTAAGGGCAATCattttgtatatatagtttaGGCAGTTATATCCTTACGAGGAAGATACATTTTGTATTTGTTGTGCTACAGAAATTTGCATCAGTGTGCAAACTAGCCTCTCAGGTCAGATATTCTCAGGTTCGTATACAAGGACATTAATTTAGAAATTAAACGAAATAACCCAGTTTGATGACCAATAAGCACAATTTAGTTATCTGAAAATATTACTTGTTACAAGCAAAAAAGGGAATGTAATTGAATTGCCTTATACTGCCTACTTATTTGTTTTTCTGCTTTATAATTGTAATAATCACCTGTCAATttactagttaaaaaaaaaaaaagttatttaattACTGTAGGTTTATAACTCCTCAAACATATCACTCAATCTAAACCTCTGAtctgattatttatttgagattTCATTGTTACTTACAACCATTTTTTCTGAGTAAGGCAGTCTATGTTTTTATGTTATATTGAAAGGCATTCATTGAAGTAGAAATCACTGGAAAGCATTTCAGCCCTGTAATATGAATGAAGAACTGGTGTGTACTCAAGTCTCCACTTGTCCTTAAATTTAGTATTCATTCCAAGAAAATGGTTTTCAAATGTTGATCCCTTAAATTGTGCAATGAAAGTCATGCATGTGTTTAATATCAGTGTTTGATTTGTGTATTTGTTGCGTGCCTATTAAAACCTATTTGGGACCATTGAGTATTTTGGCTTTGCAATGACATTTCAGGCAAGGTAACATGTCTAGGCCtagatcagtgtttcccaaacacAGAAACCACCAGCTTTTTAACATATTTGTTGCAACCCTGATAAAGCACACCTCGTTCAACTAGTACACAAAATAAAATCAAGCCATTACCTAGTTGAATCTGATGTGCTAGCCCAGAGCTACAACAAATATCTGATGGTTGGTGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU683274 lncRNA downstream 7187 33667130 ~ 33667359 (-) True G599842
TU683273 lncRNA downstream 9131 33665210 ~ 33665415 (-) True G599841
TU683271 lncRNA downstream 10252 33664085 ~ 33664294 (-) True G599839
TU683226 lncRNA downstream 66261 33608064 ~ 33608285 (-) True G599795
TU683119 lncRNA downstream 123203 33491670 ~ 33551343 (-) True G599699
TU683216 lncRNA upstream 867 33676731 ~ 33677218 (-) True G599788
TU683306 lncRNA upstream 63149 33739013 ~ 33743234 (-) True G599873
TU683307 lncRNA upstream 63448 33739312 ~ 33743434 (-) True G599874
TU683337 lncRNA upstream 114374 33790238 ~ 33790444 (-) True G599899
TU683339 lncRNA upstream 115790 33791654 ~ 33826037 (-) True G599901
XR_005052735.1 mRNA downstream 173285 33501207 ~ 33501261 (-) True LOC118965409
XM_021609103.2 mRNA downstream 312302 33332996 ~ 33362244 (-) True oser1
XM_021609102.2 mRNA downstream 312336 33332996 ~ 33362210 (-) False oser1
XR_005052570.1 mRNA downstream 331955 33340670 ~ 33342591 (-) True LOC118965284
XM_021608266.2 mRNA downstream 524721 33146428 ~ 33149825 (-) True gdf5
XM_021609113.2 mRNA upstream 1480 33677344 ~ 33746418 (-) False LOC110527676
XM_021609112.2 mRNA upstream 1481 33677345 ~ 33746699 (-) False LOC110527676
XM_036983160.1 mRNA upstream 6308 33682172 ~ 33746700 (-) True LOC110527676
XM_021609117.2 mRNA upstream 94207 33770071 ~ 33774908 (-) False LOC110527679
NM_001124468.1 mRNA upstream 141359 33817223 ~ 33835858 (-) True ywhaba
TU682449 other downstream 434751 33238147 ~ 33239795 (-) True G599058
TU682450 other downstream 436111 33238047 ~ 33238435 (-) False G599058
TU681689 other downstream 1254398 32418190 ~ 32420148 (-) True G598354
TU679696 other downstream 2595228 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 2737932 30936165 ~ 30936614 (-) True G596352
TU683215 other upstream 215 33676079 ~ 33677297 (-) False G599788
TU683219 other upstream 306 33676170 ~ 33677297 (-) False G599788
TU683321 other upstream 94186 33770050 ~ 33774614 (-) True LOC110527679
TU684338 other upstream 938628 34614492 ~ 34614875 (-) True G600721
TU684513 other upstream 1289583 34965447 ~ 34966786 (-) True G600872

Expression Profile