RNA id: TU683215



Basic Information


Item Value
RNA id TU683215
length 1219
RNA type TUCP
GC content 0.44
exon number 1
gene id G599788
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33674546 ~ 33677297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttattggatatttcaaactttcaatcaaaaactgaaaaattgggcgtgcaaaatgattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgataggctcagaggtccgttaaatcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttcctaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgcccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctagatgaactgcagagatctacagctgaggtgggagactgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaatgcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacgggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatgcaatggttcaaaaatgaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatggggaaaaaaattcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU683218 lncRNA downstream 215 33674546 ~ 33675864 (-) False G599788
TU683217 lncRNA downstream 215 33674687 ~ 33675864 (-) False G599788
TU683212 lncRNA downstream 215 33674773 ~ 33675864 (-) False G599788
TU683274 lncRNA downstream 8720 33667130 ~ 33667359 (-) True G599842
TU683273 lncRNA downstream 10664 33665210 ~ 33665415 (-) True G599841
TU683306 lncRNA upstream 61716 33739013 ~ 33743234 (-) True G599873
TU683307 lncRNA upstream 62015 33739312 ~ 33743434 (-) True G599874
TU683337 lncRNA upstream 112941 33790238 ~ 33790444 (-) True G599899
TU683339 lncRNA upstream 114357 33791654 ~ 33826037 (-) True G599901
TU683375 lncRNA upstream 173916 33851213 ~ 33851488 (-) True G599935
XR_005052735.1 mRNA downstream 174818 33501207 ~ 33501261 (-) True LOC118965409
XM_021609103.2 mRNA downstream 313835 33332996 ~ 33362244 (-) True oser1
XM_021609102.2 mRNA downstream 313869 33332996 ~ 33362210 (-) False oser1
XR_005052570.1 mRNA downstream 333488 33340670 ~ 33342591 (-) True LOC118965284
XM_021608266.2 mRNA downstream 526254 33146428 ~ 33149825 (-) True gdf5
XM_021609113.2 mRNA upstream 47 33677344 ~ 33746418 (-) False LOC110527676
XM_021609112.2 mRNA upstream 48 33677345 ~ 33746699 (-) False LOC110527676
XM_036983160.1 mRNA upstream 4875 33682172 ~ 33746700 (-) True LOC110527676
XM_021609117.2 mRNA upstream 92774 33770071 ~ 33774908 (-) False LOC110527679
NM_001124468.1 mRNA upstream 139926 33817223 ~ 33835858 (-) True ywhaba
TU682449 other downstream 436284 33238147 ~ 33239795 (-) True G599058
TU682450 other downstream 437644 33238047 ~ 33238435 (-) False G599058
TU681689 other downstream 1255931 32418190 ~ 32420148 (-) True G598354
TU679696 other downstream 2596761 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 2739465 30936165 ~ 30936614 (-) True G596352
TU683321 other upstream 92753 33770050 ~ 33774614 (-) True LOC110527679
TU684338 other upstream 937195 34614492 ~ 34614875 (-) True G600721
TU684513 other upstream 1288150 34965447 ~ 34966786 (-) True G600872
TU684544 other upstream 1324583 35001880 ~ 35055228 (-) False G600881
TU684542 other upstream 1325183 35002480 ~ 35055133 (-) False G600881

Expression Profile