RNA id: TU683459


Basic Information

Item Value
RNA id TU683459
length 213
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G600015
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33967896 ~ 33968108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccaagcctccccagcttctcctttacccaaatccagatagcagatgttctgaaagagctgaaaaacctggacccgtacaaatcagctgggcttgacaatctggaccctctatttctgaaactatccgccgccattgtcgcaacccctattaccagcctgttcaacctctctttcatatcgtctgagatccccaaggactggaaagctgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU683458 lncRNA upstream 381 33967301 ~ 33967515 (+) True G600014
TU682958 lncRNA upstream 14906 33951888 ~ 33952990 (+) True G599551
TU682928 lncRNA upstream 85679 33881960 ~ 33882217 (+) True G599521
TU682913 lncRNA upstream 107413 33860126 ~ 33860483 (+) True G599506
TU682911 lncRNA upstream 108806 33858626 ~ 33859090 (+) True G599504
TU683476 lncRNA downstream 11780 33979888 ~ 33980986 (+) True G600032
TU683483 lncRNA downstream 15494 33983602 ~ 33984120 (+) True G600039
TU683485 lncRNA downstream 19482 33987590 ~ 33987789 (+) True G600041
TU683492 lncRNA downstream 29117 33997225 ~ 34003353 (+) True G600047
TU683513 lncRNA downstream 55842 34023950 ~ 34024291 (+) True G600067
XM_021609118.2 mRNA upstream 23328 33884249 ~ 33944568 (+) False rims4
XM_021609119.2 mRNA upstream 23328 33884249 ~ 33944568 (+) True rims4
XM_021609114.1 mRNA upstream 160417 33801818 ~ 33807479 (+) False tomm34
XM_036983161.1 mRNA upstream 160417 33801818 ~ 33807479 (+) True tomm34
XM_036983162.1 mRNA upstream 161986 33801818 ~ 33805910 (+) False tomm34
XM_036983164.1 mRNA downstream 563868 34531976 ~ 35053552 (+) False LOC110517647
XM_036983165.1 mRNA downstream 563868 34531976 ~ 35053552 (+) True LOC110517647
XM_036983166.1 mRNA downstream 758293 34726401 ~ 34728809 (+) False LOC118965286
XR_005052572.1 mRNA downstream 758297 34726405 ~ 34728810 (+) False LOC118965286
XM_036983167.1 mRNA downstream 758299 34726407 ~ 34728803 (+) False LOC118965286
TU683457 other upstream 1141 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 672368 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 731260 33235813 ~ 33236636 (+) True G599004
TU680885 other upstream 1957966 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 2885606 31081721 ~ 31082290 (+) True G596297
TU683953 other downstream 791239 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 1003020 34971128 ~ 34971405 (+) True G600531
TU685500 other downstream 2605779 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 3121516 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 4530923 38499031 ~ 38499662 (+) True G604207

Expression Profile