RNA id: TU683525


Basic Information

Item Value
RNA id TU683525
length 267
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G600079
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 34033661 ~ 34033927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacttttgtaattttaaaaagtgacgttgcgtcttgtaaatgggcttttcgcagcatcagactggccttcagcaaatgacattttgggtatacaatgacggatttaatcgggaaaaagacccaattgtgatgtttatgggacatataggagtgccaacaaagaagctcgtccaaggtaattaatgttttatattttatttctgcgttttgggtagcgccggctaccgcaaaatctgttgtttacgtgtcgtgctgttATTTTGGGGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU683513 lncRNA upstream 9370 34023950 ~ 34024291 (+) True G600067
TU683492 lncRNA upstream 30308 33997225 ~ 34003353 (+) True G600047
TU683485 lncRNA upstream 45872 33987590 ~ 33987789 (+) True G600041
TU683483 lncRNA upstream 49541 33983602 ~ 33984120 (+) True G600039
TU683476 lncRNA upstream 52675 33979888 ~ 33980986 (+) True G600032
TU683527 lncRNA downstream 586 34034513 ~ 34034773 (+) True G600081
TU683535 lncRNA downstream 9525 34043452 ~ 34044653 (+) True G600089
TU683536 lncRNA downstream 10757 34044684 ~ 34044935 (+) True G600090
TU683539 lncRNA downstream 23653 34057580 ~ 34058001 (+) True G600093
TU683540 lncRNA downstream 24259 34058186 ~ 34091029 (+) True G600094
XM_021609118.2 mRNA upstream 89093 33884249 ~ 33944568 (+) False rims4
XM_021609119.2 mRNA upstream 89093 33884249 ~ 33944568 (+) True rims4
XM_021609114.1 mRNA upstream 226182 33801818 ~ 33807479 (+) False tomm34
XM_036983161.1 mRNA upstream 226182 33801818 ~ 33807479 (+) True tomm34
XM_036983162.1 mRNA upstream 227751 33801818 ~ 33805910 (+) False tomm34
XM_036983164.1 mRNA downstream 498049 34531976 ~ 35053552 (+) False LOC110517647
XM_036983165.1 mRNA downstream 498049 34531976 ~ 35053552 (+) True LOC110517647
XM_036983166.1 mRNA downstream 692474 34726401 ~ 34728809 (+) False LOC118965286
XR_005052572.1 mRNA downstream 692478 34726405 ~ 34728810 (+) False LOC118965286
XM_036983167.1 mRNA downstream 692480 34726407 ~ 34728803 (+) False LOC118965286
TU683457 other upstream 66906 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 738133 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 797025 33235813 ~ 33236636 (+) True G599004
TU680885 other upstream 2023731 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 2951371 31081721 ~ 31082290 (+) True G596297
TU683953 other downstream 725420 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 937201 34971128 ~ 34971405 (+) True G600531
TU685500 other downstream 2539960 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 3055697 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 4465104 38499031 ~ 38499662 (+) True G604207

Expression Profile