RNA id: TU683540


Basic Information

Item Value
RNA id TU683540
length 2122
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G600094
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 34058186 ~ 34091029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattttaaccacttccggttggtccaggaagcttagaatcgacacaggtagacctcatagtggcctgatggactgtcatcgatgacaggttcatacggcattcataacccacataggcttcaggttgaatttcggggtgcaggcaatgtattcctatggggagagaagtcattgtaatctgtgagatcaaaaaaccctgttttactgttaagggttaatgcaacacggtcaaggttaggcttacacggatcaggaggaccttaggaacgtacctgaggtcgaattgtgcttctcaccctaacggttctctcactgtcacccaaaagcaaattacgttgtggggcaggcttcattttgggcctacttttctaatggtcgctgcgcttagaccgagcgagctacggtcaagcgggatatctcgatgaactctgcacggcctagggattatggtaatgccattgcctgctctctgtgtctttaagcaccgcacttttttcactccatccttgctgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaattactgatttacagttcaggagggttacctagtcacacatatgaagttttggagagatgtgactttttaacccttcaaaacagacagtgtgaaccaattaaaggcacttccggttggcacaggaagctataagtaaacacatgtcttgactgaggtagcctcttacagaatcctgagttttaagtctttaagttaagaattgactgatctacacagggttgaatgcagtgattttcataatgacaggttatgtgtttcaaaacacttttagggtgaatttaaccacttccggttggtccaggaagcttagaatcgacacaggtagacctcatagtggcctgatggactgtcatcgatgacaggttcatacggcattcataacccacataggcttccggttgaatttaggggtgcaggcaatgtattcctatggggagagaagtcaatgcaaactgtttgaagtaaacacctacttttaactgtttagggttaatgccacacggtcgaggttaggcttgcacggatcgggaggaccttaggaacgtacctgaggtcgaattgtgcttctcaccctaacggttctctcactgtcaccccaaaagcagaaggtgaacagcaagcgaaatcccaagaaaaacctggtcacaaaaaccacagaaaagtattaatccgccagtctctgagttgtttattgcaagcaaaaatatatagcagggagcttgcagttcctacaacttccacacgatgtcgccaaaaacgtcattttcattgacaaatatcctttgtgtaatgacaaatagatccttcatttcgtccagcatacaggaatcgatttttgaaaagaggacaacgttttcttgagtagctgctattgaatacagatcgcccagtgatcaatttgatcgattattaacgtttacaaatacctaaagttgggttacaaaagtaggttgaagtgttttgtcaaagaatataggcaacttatataattttaaaaaatgacgttgcgttttggaacggagcttttcctgaaccagacaggctatacaaatggatattttgggcatacatggacggatttaatcgggaaaaagacccaattgtgatgtttatggaacatataggagtgccaacaaagaatatcatcaaaggtaatgaatgttttatattttatttctgcgttttgtgtagcgccggctacgctaattattttgtttacgtccccttcaggtattttggggtgttccatgctatcagataatagcttctcatgctttcaccgaaaatcgtttttaaaatctgacttgttggctagattcacaacgagtgtagctttaattcaataccctgcatgtgtgttttaatgaacgtttgagttttaacgagtacatttagcatttagcgtagcgcatttgcatttccaggtgtctagatgagacatctgcgtctcaggtaggagcaagaagtttaagcaccgcactttttcactccatccttgctgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaatgactgatttacagttcaggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU683539 lncRNA upstream 185 34057580 ~ 34058001 (+) True G600093
TU683536 lncRNA upstream 13251 34044684 ~ 34044935 (+) True G600090
TU683535 lncRNA upstream 13533 34043452 ~ 34044653 (+) True G600089
TU683527 lncRNA upstream 23413 34034513 ~ 34034773 (+) True G600081
TU683525 lncRNA upstream 24259 34033661 ~ 34033927 (+) True G600079
TU683659 lncRNA downstream 144453 34235482 ~ 34235709 (+) True G600202
TU683671 lncRNA downstream 204361 34295390 ~ 34297524 (+) True G600211
TU683716 lncRNA downstream 246338 34337367 ~ 34337835 (+) False G600245
TU683715 lncRNA downstream 246694 34337723 ~ 34340023 (+) True G600245
TU683725 lncRNA downstream 264425 34355454 ~ 34356850 (+) True G600251
XM_021609118.2 mRNA upstream 113618 33884249 ~ 33944568 (+) False rims4
XM_021609119.2 mRNA upstream 113618 33884249 ~ 33944568 (+) True rims4
XM_021609114.1 mRNA upstream 250707 33801818 ~ 33807479 (+) False tomm34
XM_036983161.1 mRNA upstream 250707 33801818 ~ 33807479 (+) True tomm34
XM_036983162.1 mRNA upstream 252276 33801818 ~ 33805910 (+) False tomm34
XM_036983164.1 mRNA downstream 440947 34531976 ~ 35053552 (+) False LOC110517647
XM_036983165.1 mRNA downstream 440947 34531976 ~ 35053552 (+) True LOC110517647
XM_036983166.1 mRNA downstream 635372 34726401 ~ 34728809 (+) False LOC118965286
XR_005052572.1 mRNA downstream 635376 34726405 ~ 34728810 (+) False LOC118965286
XM_036983167.1 mRNA downstream 635378 34726407 ~ 34728803 (+) False LOC118965286
TU683457 other upstream 91431 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 762658 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 821550 33235813 ~ 33236636 (+) True G599004
TU680885 other upstream 2048256 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 2975896 31081721 ~ 31082290 (+) True G596297
TU683953 other downstream 668318 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 880099 34971128 ~ 34971405 (+) True G600531
TU685500 other downstream 2482858 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 2998595 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 4408002 38499031 ~ 38499662 (+) True G604207

Expression Profile