RNA id: TU684759


Basic Information

Item Value
RNA id TU684759
length 675
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G601061
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35391829 ~ 35405224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtgttactgtgttaatgtgtctctcatataaccacaaccctgtgttactgtgtctcatataaccacaaccctgtgttactgtgtctctcatataaccacagccctgtgttactgtgttactgtgtctcatataaccacagccctgtgttattgtgttactgtctcttatataaccacatccctgtgttactgtgttactgtctctcatataaccacagccctgtgttactgtgtctctcatataaccacatccccgttttactgtgtctctcataaaaccacatccctgtgttactgtgtctctcatataaccacatccctgtgttactgtgtctctcatgtaaccacatccctgtgttactgtgtctctcacataaccacatccctgtgttactgtgtctcttatataaccacatccctgtgttactgtgtctctcatataaccaaatccctgtgttactgtctctcatataaccacaccCCTGTGTTAcagtgtctctcatataaccacatccctgtgttactgtgtctctcataaaACCACAttcctgtgttactgtgtctctcatataaacacaaccctgtgttactgtctctcatataaccacagccctgtgttactgtgtctctcatataaccacagccctgagttacagtgtctctgtctctcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU684726 lncRNA downstream 20559 35370936 ~ 35371270 (-) True G601036
TU684724 lncRNA downstream 22519 35369078 ~ 35369310 (-) True G601034
TU684721 lncRNA downstream 41449 35350177 ~ 35350380 (-) True G601031
TU684705 lncRNA downstream 59019 35332583 ~ 35332810 (-) True G601017
TU684680 lncRNA downstream 82650 35308958 ~ 35309179 (-) True G600992
TU684780 lncRNA upstream 52147 35457371 ~ 35457816 (-) True G601079
TU684788 lncRNA upstream 66545 35471769 ~ 35472184 (-) True G601087
TU684800 lncRNA upstream 87762 35492986 ~ 35493429 (-) True G601098
TU684807 lncRNA upstream 90652 35495876 ~ 35496248 (-) True G601103
TU684839 lncRNA upstream 139055 35544279 ~ 35544596 (-) True G601128
XM_036984425.1 mRNA downstream 191731 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1433504 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 1555971 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 1616921 33770071 ~ 33774908 (-) False LOC110527679
XM_036983160.1 mRNA downstream 1645129 33682172 ~ 33746700 (-) True LOC110527676
XM_036984426.1 mRNA upstream 207165 35612389 ~ 35612805 (-) True LOC118965353
XM_036983171.1 mRNA upstream 1132914 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 1132914 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 1132914 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 1132914 36538138 ~ 36559211 (-) False LOC110527685
TU684544 other downstream 336601 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 336696 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 425043 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 776954 34614492 ~ 34614875 (-) True G600721
TU683321 other downstream 1617215 33770050 ~ 33774614 (-) True LOC110527679
TU684989 other upstream 355475 35760699 ~ 35761270 (-) True G601245
TU688481 other upstream 3183931 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 3184193 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 3185644 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 3197106 38602330 ~ 38639400 (-) True G604484

Expression Profile