RNA id: TU684800



Basic Information


Item Value
RNA id TU684800
length 444
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G601098
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35492986 ~ 35493429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTAAACACAAGGCAGGATTTACGTGAGTTCATTAAGACTTAAACACCAGGTAGGATTAACGTAAATTCATCAAGACTTAAACACAAGGCAGGATTAACGTGAGTTCATCAAGACTTAAACACAAGGTAGGATTAACGTGAGTTCATCAAGACTTAAACACAAGGTAGGATTTACGTGAGTTCATCAAGACTTAAACACAAGGTAGGATTAACGTGAGTTCATCAAGACTTAAACACCAGGTAGGATTAACGTGAGTTCATTAAGACTTAAACACCAGGTAGGATTAACGTAAATTCATCAAGACTTAAACACAAGGTAGGATTAACGTGAGTTCATTAAGACTTAAACACCAGGTAGGATTAACGTAAATTCATCAAGACTTAAACACAAGGCAGGATTAACGTGAGTTCATCAAGACTTAAACACAAGGTAGGATTTACGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU684788 lncRNA downstream 20802 35471769 ~ 35472184 (-) True G601087
TU684780 lncRNA downstream 35170 35457371 ~ 35457816 (-) True G601079
TU684759 lncRNA downstream 87762 35391829 ~ 35405224 (-) True G601061
TU684726 lncRNA downstream 121716 35370936 ~ 35371270 (-) True G601036
TU684724 lncRNA downstream 123676 35369078 ~ 35369310 (-) True G601034
TU684807 lncRNA upstream 2447 35495876 ~ 35496248 (-) True G601103
TU684839 lncRNA upstream 50850 35544279 ~ 35544596 (-) True G601128
TU684863 lncRNA upstream 79883 35573312 ~ 35573583 (-) True G601146
TU684868 lncRNA upstream 86844 35580273 ~ 35580479 (-) True G601151
TU684897 lncRNA upstream 104370 35597799 ~ 35599547 (-) False G601170
XM_036984425.1 mRNA downstream 292888 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1534661 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 1657128 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 1718078 33770071 ~ 33774908 (-) False LOC110527679
XM_036983160.1 mRNA downstream 1746286 33682172 ~ 33746700 (-) True LOC110527676
XM_036984426.1 mRNA upstream 118960 35612389 ~ 35612805 (-) True LOC118965353
XM_036983171.1 mRNA upstream 1044709 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 1044709 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 1044709 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 1044709 36538138 ~ 36559211 (-) False LOC110527685
TU684544 other downstream 437758 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 437853 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 526200 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 878111 34614492 ~ 34614875 (-) True G600721
TU683321 other downstream 1718372 33770050 ~ 33774614 (-) True LOC110527679
TU684989 other upstream 267270 35760699 ~ 35761270 (-) True G601245
TU688481 other upstream 3095726 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 3095988 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 3097439 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 3108901 38602330 ~ 38639400 (-) True G604484

Expression Profile