RNA id: TU684895


Basic Information

Item Value
RNA id TU684895
length 525
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G601170
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35597799 ~ 35599547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GatcaacaacattaacaacattCCACCCATGTGGCCATTCAGCGGGAAAGGGGCTCCGGGAAAGTGGGACATTTGGGCTGTATACATTGTTGTTTTTGGTTTTTAAGGTTaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacaGTGGGTCTTTAACACTAGGGGTTaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtctcactaggggttaggtaacataatgtagacagtaggtCTCACTAGGGGTTACGTAACATAATATAGACAGTGGGTCTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU684868 lncRNA downstream 18072 35580273 ~ 35580479 (-) True G601151
TU684863 lncRNA downstream 24968 35573312 ~ 35573583 (-) True G601146
TU684839 lncRNA downstream 53955 35544279 ~ 35544596 (-) True G601128
TU684807 lncRNA downstream 102303 35495876 ~ 35496248 (-) True G601103
TU684800 lncRNA downstream 105122 35492986 ~ 35493429 (-) True G601098
TU684910 lncRNA upstream 17827 35617374 ~ 35617661 (-) True G601183
TU684923 lncRNA upstream 26259 35625806 ~ 35626071 (-) True G601188
TU684956 lncRNA upstream 105235 35704782 ~ 35705183 (-) True G601218
TU684957 lncRNA upstream 105906 35705453 ~ 35705719 (-) True G601219
TU684958 lncRNA upstream 106361 35705908 ~ 35706264 (-) True G601220
XM_036984425.1 mRNA downstream 398453 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1640226 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 1762693 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 1823643 33770071 ~ 33774908 (-) False LOC110527679
XM_036983160.1 mRNA downstream 1851851 33682172 ~ 33746700 (-) True LOC110527676
XM_036984426.1 mRNA upstream 12842 35612389 ~ 35612805 (-) True LOC118965353
XM_036983171.1 mRNA upstream 938591 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 938591 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 938591 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 938591 36538138 ~ 36559211 (-) False LOC110527685
TU684544 other downstream 543323 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 543418 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 631765 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 983676 34614492 ~ 34614875 (-) True G600721
TU683321 other downstream 1823937 33770050 ~ 33774614 (-) True LOC110527679
TU684989 other upstream 161152 35760699 ~ 35761270 (-) True G601245
TU688481 other upstream 2989608 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2989870 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2991321 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 3002783 38602330 ~ 38639400 (-) True G604484

Expression Profile