RNA id: TU684994



Basic Information


Item Value
RNA id TU684994
length 373
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G601250
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35770829 ~ 35771201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGCTGGAGACATAGTGATGCTGTAAACATCTATGAGTGATACTACTGTAAGATCGTGTACAGATGTGTGAACTAGGTAGATAATGAAGACGTCACCACACAGCAGTGTGATGTAATTACATTGCCTAGAGTGTAATAATAATGTAGACAGGAATGAACACGTCAACCTGTCATCTCACAGCTGAGAAGTATTTAAGAAACAGAAGACGAGCTCCAGTTtagctgtaatgtactgtactgtactgtaccctactgtactgtactctcccTACTGTTCtgaactgtcctgtactgtactgtactcttcctactgtactgttatgtcctgtactgtactgtactctccctactgtactgtactctccctactgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU684991 lncRNA downstream 4469 35766065 ~ 35766360 (-) True G601247
TU684958 lncRNA downstream 64565 35705908 ~ 35706264 (-) True G601220
TU684957 lncRNA downstream 65110 35705453 ~ 35705719 (-) True G601219
TU684956 lncRNA downstream 65646 35704782 ~ 35705183 (-) True G601218
TU684923 lncRNA downstream 144758 35625806 ~ 35626071 (-) True G601188
TU684995 lncRNA upstream 2036 35773237 ~ 35773443 (-) True G601251
TU685004 lncRNA upstream 27258 35798459 ~ 35798915 (-) True G601260
TU685005 lncRNA upstream 35453 35806654 ~ 35807092 (-) True G601261
TU685010 lncRNA upstream 38046 35809247 ~ 35810867 (-) True G601265
TU685025 lncRNA upstream 53330 35824531 ~ 35824865 (-) True G601279
XM_036984426.1 mRNA downstream 158024 35612389 ~ 35612805 (-) True LOC118965353
XM_036984425.1 mRNA downstream 570731 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1812504 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 1934971 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 1995921 33770071 ~ 33774908 (-) False LOC110527679
XM_036983171.1 mRNA upstream 766937 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 766937 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 766937 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 766937 36538138 ~ 36559211 (-) False LOC110527685
XM_021609122.2 mRNA upstream 771189 36542390 ~ 36559070 (-) False LOC110527685
TU684989 other downstream 9559 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 715601 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 715696 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 804043 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 1155954 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 2817954 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2818216 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2819667 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 2831129 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 3291804 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile