RNA id: TU685054



Basic Information


Item Value
RNA id TU685054
length 352
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G601299
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35849011 ~ 35849362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctacagtacggtcccagacctccagactctacagtacggtcccatacctccagactctagAGTACGGTCCCTGACCtagagactctacagtacggtcccagacctccagactctacagtacggtcccatacctccagactctacagtacggtccctgacctccagactctacagtacggtcccacacctccagactctacagtacggtcccatacctccggactctacagtacggtcccagacctccagactctactgtacggtcccagacctccagactctacagtgcggtcccatacctccagactctacagtacggtcccagacctccagactctacagtgtCCCATGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU685025 lncRNA downstream 24146 35824531 ~ 35824865 (-) True G601279
TU685010 lncRNA downstream 38144 35809247 ~ 35810867 (-) True G601265
TU685005 lncRNA downstream 41919 35806654 ~ 35807092 (-) True G601261
TU685004 lncRNA downstream 50096 35798459 ~ 35798915 (-) True G601260
TU684995 lncRNA downstream 75568 35773237 ~ 35773443 (-) True G601251
TU685056 lncRNA upstream 5484 35854846 ~ 35855064 (-) True G601301
TU685057 lncRNA upstream 6570 35855932 ~ 35856242 (-) True G601302
TU685058 lncRNA upstream 13418 35862780 ~ 35863059 (-) True G601303
TU685059 lncRNA upstream 14119 35863481 ~ 35863806 (-) True G601304
TU685061 lncRNA upstream 14944 35864306 ~ 35864709 (-) True G601306
XM_036984426.1 mRNA downstream 236206 35612389 ~ 35612805 (-) True LOC118965353
XM_036984425.1 mRNA downstream 648913 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1890686 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 2013153 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 2074103 33770071 ~ 33774908 (-) False LOC110527679
XM_036983171.1 mRNA upstream 688776 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 688776 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 688776 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 688776 36538138 ~ 36559211 (-) False LOC110527685
XM_021609122.2 mRNA upstream 693028 36542390 ~ 36559070 (-) False LOC110527685
TU684989 other downstream 87741 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 793783 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 793878 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 882225 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 1234136 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 2739793 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2740055 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2741506 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 2752968 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 3213643 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile