RNA id: TU685059



Basic Information


Item Value
RNA id TU685059
length 326
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G601304
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35863481 ~ 35863806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctctctctgtctctctctcgctcaattaAATATAAGGGGCTttatttgcatgggaaaaacatgtttacattttcAAAGCAAGTGAAGTGCCTGAGGACCGTGTGTTgattaaatagagagagagagagagagactgagagagagagagatagactgagagagagagagaatgggggggagagagagattgagagagagagagagagactaagagagagagagagagacagagagatagagtggagagagagatagagggggagagagagagagagagagagagagagaggcctgtctgTTATGTTGTCAGTAGTGTGTATCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU685058 lncRNA downstream 422 35862780 ~ 35863059 (-) True G601303
TU685057 lncRNA downstream 7239 35855932 ~ 35856242 (-) True G601302
TU685056 lncRNA downstream 8417 35854846 ~ 35855064 (-) True G601301
TU685054 lncRNA downstream 14119 35849011 ~ 35849362 (-) True G601299
TU685025 lncRNA downstream 38616 35824531 ~ 35824865 (-) True G601279
TU685061 lncRNA upstream 500 35864306 ~ 35864709 (-) True G601306
TU685068 lncRNA upstream 4063 35867869 ~ 35868327 (-) True G601312
TU685102 lncRNA upstream 32219 35896025 ~ 35924751 (-) True G601342
TU685117 lncRNA upstream 66702 35930508 ~ 35930846 (-) True G601356
TU685121 lncRNA upstream 96392 35960198 ~ 35960424 (-) True G601360
XM_036984426.1 mRNA downstream 250676 35612389 ~ 35612805 (-) True LOC118965353
XM_036984425.1 mRNA downstream 663383 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 1905156 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 2027623 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 2088573 33770071 ~ 33774908 (-) False LOC110527679
XM_036983171.1 mRNA upstream 674332 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 674332 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 674332 36538138 ~ 36559210 (-) False LOC110527685
XM_036983174.1 mRNA upstream 674332 36538138 ~ 36559211 (-) False LOC110527685
XM_021609122.2 mRNA upstream 678584 36542390 ~ 36559070 (-) False LOC110527685
TU684989 other downstream 102211 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 808253 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 808348 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 896695 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 1248606 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 2725349 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2725611 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2727062 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 2738524 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 3199199 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile