RNA id: TU685223


Basic Information

Item Value
RNA id TU685223
length 858
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G601451
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36102193 ~ 36103050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatccacaaagaattcgaaaacaaatccaatattgataaactcccatatctactgggtgaaattccacagtgtgccatcacagcagcaagatttgtgacctgttgccacgagaaaagggcaaccagtgaagaacacacaccattgtaaatacaacccatatttatgcttatttattttatcttgtgtcctttaaccattcgtacattgttaaaacactgtatatatataatatgacatttgtaatgtctttattgttttgaaacttctgtatgtgtaatgtttactgttcatttttattgtttatttcactttatatgtTCACTTTAtgtattatctacctcacttgctttggcaatgttaacacatgtttcccatgccaataaagcccttgaattgaattgagagagagacagagagagaaagagagagagagagacagagagagacagagacagagagagagagagacagagagagacacagagagagagggagagagagagaaggatatagagacagagatagagagaaagggagagagacagagacagagactgagccagagacagagacagagacagagacagagagagagagacagagagagagagagagagagagagagagacagagacagagacagagagagagagagagagagagagagagagagagagacagagacagagagcgacagagactgagccagagacagagacagagacagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagacagagacagagagagagacagagagagagagagagagagagagaccgtgacagagacagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685220 lncRNA upstream 1349 36100425 ~ 36100844 (+) True G601448
TU685203 lncRNA upstream 18178 36083686 ~ 36084015 (+) True G601431
TU685159 lncRNA upstream 61772 36039787 ~ 36040421 (+) True G601389
TU685146 lncRNA upstream 102587 35998856 ~ 35999606 (+) True G601379
TU685144 lncRNA upstream 105554 35996064 ~ 35996639 (+) True G601377
TU685252 lncRNA downstream 55041 36158091 ~ 36196201 (+) True G601478
TU685274 lncRNA downstream 91093 36194143 ~ 36194748 (+) True G601496
TU685308 lncRNA downstream 93802 36196852 ~ 36197070 (+) True G601517
TU685322 lncRNA downstream 100114 36203164 ~ 36203433 (+) True G601520
TU685328 lncRNA downstream 113057 36216107 ~ 36216444 (+) True G601526
XM_036984428.1 mRNA upstream 77825 36006411 ~ 36024368 (+) True LOC118965354
XR_005052572.1 mRNA upstream 1373383 34726405 ~ 34728810 (+) False LOC118965286
XM_036983166.1 mRNA upstream 1373384 34726401 ~ 34728809 (+) False LOC118965286
LOC110527683 mRNA downstream 367266 36470316 ~ 36536037 (+) True LOC110527683
XR_002474151.2 mRNA downstream 407944 36510994 ~ 36517194 (+) False LOC110527684
XM_021609126.2 mRNA downstream 470761 36573811 ~ 36582978 (+) False LOC110527686
XM_021609127.2 mRNA downstream 470761 36573811 ~ 36582978 (+) False LOC110527686
XM_036983176.1 mRNA downstream 470761 36573811 ~ 36582978 (+) False LOC110527686
TU684077 other upstream 1130788 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 1342535 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2135438 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 2806665 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 2865557 33235813 ~ 33236636 (+) True G599004
TU685500 other downstream 470837 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 986574 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 2395981 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 2481424 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 4023484 40126534 ~ 40134450 (+) False G606400

Expression Profile