RNA id: TU685350


Basic Information

Item Value
RNA id TU685350
length 1830
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G601540
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36254338 ~ 36297538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaccaaccggaagtgccataattggtgtcacaggggctgtttcgaagggttaaaaaagtcacatctctccaaaacttcatatgtgtgattaggcaacccccatgaactgtaaaatcagtaatttctcccaacagatgtcaaagaaaagctctctcacacacacacagcaaggatggagtgaaaaaagtgcggtgcttaaagacacagagagcaggcaatggcattaccataatccctaggccgtgcagagttcatcgagatatcccgcttgaccgtagctcgctcggtctaagcgcagcgaccattagaaaagtaggcccaaaatgaagcctgccccacaacgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagcacaattcgacctcaggtacgttcctaaggtcctcctgatccgtgtaagcctaaccttgaccgtgttgcattaacccttaacagtaaaacagggttttttgatctcacagattacaatgacttctctccccataggaatacattgcctgcaccccgaaattcaacctgaagcctatgtgggttatgaatgccgtatgaacttgtcatcgatgacagtccatcaggccactatgaggtctacctgtgtcgattctaagcttcctggacgaaccggaagtggttaaaatcaccctaaaagtgtatatccatacaatgcctgcagtttgatagatatagtgcattcaaccctgtgtaaatcagtcagttcttaacgtaaggacttaaaactcaggattctgtaaaagcataccccaatgaggatatgtgtttacttatagcttcctgtgccaaccggaagtgcctttaattgggtcacactgtcagttttgaagggttaaaaaagtcacatctctccaaaacttcatatgtgtgactaggtaaccctcctgaactgtaaatcagtaatttctcccaacagatgtcaaagaaaagctctctcacacacacacagcaaggatggagtgaaaaaagtgcggtgcttaaagacacagagagcaggcaatggcattaccataatccctaggccgtgcagagttcatcgagatatcccgcttgaccgtagctcgctcggtctaagcgcagcgaccattagaaaagtaggcccaaaatgaagcctgccccacaacgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagcacaattcgacctcaggtacgttcctaaggtcctcccgatccgtgcaagcctaaccttgaccgtgtggcattaacccttaacagtaaaacagggttttttgatctcacagattacaatgacccctctccccataggaatacattgcctgcaccccgaaattcaaccggaagcctatgtgggttatgaatgccgtatgaacctgtcatcgatgacagtccatcaggccactatgaggtctacctgtgtcgattctaagcttcctggaccaaccggaagtggttaaaatcaccctaaaagtgtatatccatacaatgcctgcagtttgatagacatagtgcattcaaccctgtgtaaatcagtcagttcgtaacgtaaggacttaaaactcaggattctgtaaaagcataccccaatgaggatatgtgttgacttatagcttcctgtgccaaccggaagtgccataattggtgtcacaggtgctgtttcaaagggttaaaaaagtcacatctttccaaaacttcatatgtgtgattaggcaacccccatgaactgtaaatcagtcatttttcccataaaatttcaaaggaaaactaaatcacacagacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685333 lncRNA upstream 31797 36221041 ~ 36222541 (+) True G601530
TU685328 lncRNA upstream 37894 36216107 ~ 36216444 (+) True G601526
TU685322 lncRNA upstream 50905 36203164 ~ 36203433 (+) True G601520
TU685308 lncRNA upstream 57268 36196852 ~ 36197070 (+) True G601517
TU685252 lncRNA upstream 58137 36158091 ~ 36196201 (+) True G601478
TU685376 lncRNA downstream 13072 36310610 ~ 36311696 (+) True G601563
TU685460 lncRNA downstream 211138 36508676 ~ 36508881 (+) True G601639
TU685461 lncRNA downstream 211449 36508987 ~ 36509351 (+) True G601640
TU685433 lncRNA downstream 213652 36511190 ~ 36517166 (+) True LOC110527684
TU685434 lncRNA downstream 243744 36541282 ~ 36544739 (+) True G601613
XM_036984428.1 mRNA upstream 229970 36006411 ~ 36024368 (+) True LOC118965354
XR_005052572.1 mRNA upstream 1525528 34726405 ~ 34728810 (+) False LOC118965286
XM_036983166.1 mRNA upstream 1525529 34726401 ~ 34728809 (+) False LOC118965286
LOC110527683 mRNA downstream 172778 36470316 ~ 36536037 (+) True LOC110527683
XR_002474151.2 mRNA downstream 213456 36510994 ~ 36517194 (+) False LOC110527684
XM_021609126.2 mRNA downstream 276273 36573811 ~ 36582978 (+) False LOC110527686
XM_021609127.2 mRNA downstream 276273 36573811 ~ 36582978 (+) False LOC110527686
XM_036983176.1 mRNA downstream 276273 36573811 ~ 36582978 (+) False LOC110527686
TU684077 other upstream 1282933 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 1494680 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2287583 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 2958810 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 3017702 33235813 ~ 33236636 (+) True G599004
TU685500 other downstream 276349 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 792086 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 2201493 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 2286936 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3828996 40126534 ~ 40134450 (+) False G606400

Expression Profile