RNA id: TU685434


Basic Information

Item Value
RNA id TU685434
length 3101
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G601613
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36541282 ~ 36544739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaataaatcactctactataattctgacatttcacattcttaaagtaaagtggtgatcctaactgacctgagacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagttgaaatgtagttggctaaggtgtttgtaaacctcagacttcaactgtattatccAGGACAAAGTTAatattaaaataaattaaatacagcaTGAGATCTTAACATAAAGATGGCATGAGAGGTGCTACCTGAGCTTACAGCAAGAGAAAATCCAACCAAAAGCTTTTAATTAGTAACGTTGAAGTCGGTCTGAGACAAGCGTGCCCATGCTGATGCAGTCTTTAGATAGAACGATCAGGGACCTTCAAGGGGGTGAGCGAGACATAAACCAAGCAGTGGAACAAAGGACAAGGAGGAGAGAAGCCAGATCTTGAAGTGTAACTTTTTTTGTGACATTTTTTGATTAATTGTATAGTTAAGCATGTGGCATAAGGCACAGCCAGGTTTAAAGCAGTGACGACCAAGTACAGACAACGCTAAgcaacatcccaaatggcaccttattccctataaagtgtatcacttttgaccagagcccacttttgacaagggccctggtgaccatgctggtcatttatgaacatttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggcatcttctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgatttagtgcactatataaggaagtgccatttgggacacacttcACGTCTGTACTGTAGTTTCTATTATGGCTGTAGCTTTAGTACGGAGAAAGCCTTCGCCTTTTAGACTTGGAGCCCAGCTCCGAGGAAAGCTTTGGCTCGGGATTGGCTGAGTGGACAGGGTTACCGGAGGAGGAGGGGCCAGTGGAAACAACATGGAGGGccaggagggggaggggcttaAGACTGAGCAGACCGGAGACACAGGGGACAGCAGGGGAGTTGGGTGGGAGTGGTGAGTCAGAGGAAGAAGGTCCTTGAGGAGCCAacaaggacagagagatggaggcggAGGGGGGCGCCAAacaggaggaagaagagaaggaggaagcaGTAGAGGTAGCGGCAGGAAAGGTGgtagtagtggagagaggagggcagaggaggctggtgctGTGGGTCTGTTCAGGGTTCGAGGAGGAGAATTTAGAGGACTCTACGCTGTAGAAACAAGAGAGACAAGAAGGAAAAAGAGGGACACACAGTCGGGATGGGTTCCAGGATAGGCTGGTGAGTATGGAAGGAGTGAGGGGTAGACTTCAGGGTTGGGAGGGTGCATGAAGGGGAATCATAAGCAGACTGACAGTCAGGGAGGGGTGTGAGAGTGACAGGCATAGAAAAACTGACAATAGTGGCCATCAATGAGTAAACATCATTAGAAGACCAACTCATGTTTCAATAGACAATGTGCGTGTTTGAGATCGACTACGTTCCAGCCGGACTGCACAGgatcactgatctacaaatcaccttccATCCccaaataactactcattatgtGATAAAAATCTGTGATTCTGTGCCTCGTCTTGTTCAAACTGATCCCCTCAAACATGCCATGGATAGGGGTGGGGGTTAAGCAGTTAACACAAACACATTGCACTGTAGGCAGACTAACTGGGAGGCACCAAAATGTCAAAAGGAAGTACCATGGTGTGGGGGTAGATGAGATTGGGTGGATTCTCagttctacaaaaaaaaaaaaaagggtggGGGGGGCTTGGTTGAATACTGGGCGGAAGAAGGTCCTTCTGGAGAGCCacaggcttttgttccaacccAGCTGTTTTAGTTTGCGTTGGGCTGGATCAAAAGCCTACTGCACCAAGCAACTGTGGTGCTCCAGGACCAGGAGCAAAATTCCAGAAAGTTCCCAGAACTCAAAGTCCTCAGGTTTTTCAGAAAACATGTTGGAGGATTTCCAGAATCAGGAATGTGCAGGGAGGTAATCCTCCAACTGGAATTTAGGGGAAGTTTCTTGAATTTTGCAACCCAAAGTCAATTTATCCCCGACTCTAAAAGGACAAAAGATGGCAGTTGGTTAAAAAGCTTGTAACTAATGTGTCTGACCTGGCGTTGATGAGGTACTCTGCCAGGCTGATGGAGGCGGGGGAACCAGTGATGGTGACCTGTCTGTCTGCGGAGCCCTCGACAGGGTTCGCTATCTTTATCTGGGCACCCGACATCTGGCGGATCTCATTGATCTTAGCACCCTGGCGACCAATGATGCAGCCAATCAACTAGGAGGAAGAAAAACAGAAAGTCAGTTAAGCCAATCAACAAGATGGGAGACAAAACCAGGAATTCAGTTACGTCAATCAATTAGAGTGGAGTCGATTGATAGTGTGAAATGTCTAACCACTGGAGGGAAATGGAAGGGGAGGGTCAGTCATCACTGTGGAAATACTTACATCATTTGGAATGGTCATCTCATGGGAACTAGTTTGGGCAGACGCATCCATCCCTCCTAAATCTTGGAATCCTTGGTTGCTTGGGGCCATTGGGAAGGGGCTCTGCTGCATGGCCAGCTGGTGTAACTTGGTGAGCtgtggagagatagaggaagactgTGAGGGCAAGAGatggggcagggagggaggagagaaatggaaaggAAAGAGAAGGGACAAGAAGCACAGTCAGTAAAGTACCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685433 lncRNA upstream 24116 36511190 ~ 36517166 (+) True LOC110527684
TU685461 lncRNA upstream 31931 36508987 ~ 36509351 (+) True G601640
TU685460 lncRNA upstream 32401 36508676 ~ 36508881 (+) True G601639
TU685376 lncRNA upstream 229586 36310610 ~ 36311696 (+) True G601563
TU685350 lncRNA upstream 243744 36254338 ~ 36297538 (+) True G601540
TU685479 lncRNA downstream 905 36545644 ~ 36556378 (+) True G601656
TU685504 lncRNA downstream 40127 36584866 ~ 36585079 (+) True G601681
TU685986 lncRNA downstream 313655 36858394 ~ 36858621 (+) True G602133
TU685990 lncRNA downstream 316352 36861091 ~ 36861332 (+) True G602137
TU686153 lncRNA downstream 538208 37082947 ~ 37084573 (+) True G602293
LOC110527683 mRNA upstream 5245 36470316 ~ 36536037 (+) True LOC110527683
XR_002474151.2 mRNA upstream 24088 36510994 ~ 36517194 (+) False LOC110527684
XM_036984428.1 mRNA upstream 516914 36006411 ~ 36024368 (+) True LOC118965354
XR_005052572.1 mRNA upstream 1812472 34726405 ~ 34728810 (+) False LOC118965286
XM_036983166.1 mRNA upstream 1812473 34726401 ~ 34728809 (+) False LOC118965286
XM_021609126.2 mRNA downstream 29072 36573811 ~ 36582978 (+) False LOC110527686
XM_021609127.2 mRNA downstream 29072 36573811 ~ 36582978 (+) False LOC110527686
XM_036983176.1 mRNA downstream 29072 36573811 ~ 36582978 (+) False LOC110527686
XM_021609128.2 mRNA downstream 124062 36668801 ~ 36679505 (+) True LOC110527688
XM_036983182.1 mRNA downstream 324001 36868740 ~ 36888120 (+) False LOC110527690
TU684077 other upstream 1569877 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 1781624 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2574527 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 3245754 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 3304646 33235813 ~ 33236636 (+) True G599004
TU685500 other downstream 29148 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 544885 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 1954292 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 2039735 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3581795 40126534 ~ 40134450 (+) False G606400

Expression Profile