RNA id: TU685908


Basic Information

Item Value
RNA id TU685908
length 4037
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G602055
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36731597 ~ 36735768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAATTGGGGGCAGATTTGAGACCTGCTGGAAAAGTACCGCAACAACCTTacttacttactgactttattgtccccatggggaaatgttgttgcagtgtcatgtacacatttaaaATGGCGTGTAAATACATAACAAAATTggcaatacaactttcataacagtgacataccaatacatacattttttttaaagactagcctgctggccttactgagttgATAGGAACACTAGCCCAAggtatttaggagggatatcacacctggaaCAAATTATTGTCTAGTAAGAGAGAGCggtagggagaccagagagagggttAAAACGGCAGGATTTAGATATTCTGACCACAACCACCAAAATGGTGGTTAAACCatcagaggaggggagatgagtgaCAAAATCAATGGACAGATGAGACCAAGGACATTGAGGCATGGGAAGGAGTTTCCCTGCTGGAGCGTGCTGGGGTGATTTAGTTTGTGCACATACGGAAGAGGAATTTAGGAGTTGTAGCGAGTGATGTCCTGTGCAAAGGTAGACCACCAGTACTTTGAATAGTTTGGTTCATACTTGGATGTCCAGCGATGACAGCTGTGTTCGCCCAGGGCAGCAGCCGATCCCTCATCCCTGTGGAAACGTAGATGCGCTCAGGAGGACAGGTAGCTGGTGCGTGTTGCTTCCCCAGGGCCTGGCGAATGACCACATTTACGTAATTGATCCTGGGCGATATGTCAGAGTGAAATCGATcgaatgctcttactgagggaaggaggttgttggccaagatctcacaatacatggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgatgtttccacctccatgcctcacggttgggatggtgttcttggggttgtactcttccttcttcttcctccaaacacggcgagtggagtttagaccaaaaagctctatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgtgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccatgacggcatagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgactaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccacagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccatgctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattgtatccctgatgtccttacacagctctctggtcttggccattgtggagaggttggagtctgtttgatttagtgtgtggacaggtgtcttttatacaggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacagttgaagtgtacctttgataaacattacagacctctctctctctcctccccttcacctacactaatttgtaagtaggaaaacctgcaaaatcggcagtggatcaaatacttgttctccccactgtaatgtaatgacacattatataaactctttatagtgttttatttacattttagagggatAAGGTGATatgttggacagatcgagtgaaaaaaaggcGTTTTCTCACacatctcctcttcttctctctaccacgcattagtttcgcttccccacctgccatttttaaaaagacccgaagGAGCTCATTGCCGTCTTCAatcatgcagaaacgggcagcgtggaGGTCTCGGCATGAAttcagttggaaaggggagaaatggtgctttacaatggtattgacattacagttgatctggaagtattacgtttttttgggcgctaaaataaggtcaattgtacggaccaaggcgatgtacaaaagtgagtgagtttactTTAACACAATTTAACTGATTAACTCTGGAGGCCCCAATTCAAAATCATCTCTTTGTAGAAAAGTAACTGTTTACATTCATTCCAAAAGCGAACACATTAACACAGTTTCAAATAGATTCAAATCCTTTTTAGGCCTGTGCATTAATAACACAAGCTAAAAATAGCTAGCTAGTATGAAATGGAAGGCTACCTATCACCTatcactagctagctagcggTTAGAAATTAGCATGTGACTTGGCATTGGTTACTTTTTATAAAATGTGTATCTTTCTAAAATACGTATCATTAGAGTAGTTGATGTGTACACATGTAATGTGTACACACTCAATATGATTCCCTCTTTAGAAAAAACATTTAAGAGCCAAAACATTTATAACGGAAATAAACAAATTCAGCCGAAATGGCATCTTGTTCTCATTGACTTTCATAAAAAAGGGAGCTACCTATGTAGCTCATGTCAATGGGAAAATCTCACTTGTTTTTCACTCAGTCAAAACAGTTCAATTAGACATCAAAATGACAGGAAAACATGTTTAACTAAACTGTGTTGAGTTCTCTAGATTTTGATGAAGTAACTATGCGTACAAACCAGAGACACGGAGAGATAGCTTTTGGTTTTTTTCACTCGGCATCTTCCAATGGTCACAGACCAACGTACGAAAAAGAGAGGCGCGCACCTGCAGCAGTAACACTCTGAATGCCTCTGCCTAGTGGTAGCGCTAAGTATACACGTATATCAATGCAACACCATGGAGGACTACAATAATAATGGTGTAGCTCAGAAATAATAAGTAATCATTTGTGGAAAACATTGCTACTGCAATATAACCCCACCTTTTTCATATGTGAGTTGAATAAGTGGTTaggagcgttgggctagtaatcAAAAGGTCTCTAGTTCAAATCCCGAGCCgactaagtgaaaaatctgtcgatgtcccttgagcaagacacttaaccctaactgCTCCTGCAAGTCGgtctggataaaagcatctgctaaatgacaaaaatgataAAAACACTTTCACTTGCAATTCCACTTGTGAAAGTGAGATTTACATATGGGGTTTtcttacatgtgaaactgcaaaagAGATTCACACGTTAATGTTTTTCAAATGTAAACTTACAATTCACATGAGttgaaaacatgttattttacTCACATGAAAAGGTGAtgttaacatgtgaactctacATTTAATTCATGTGAACATATGGTTTCACGTGTGAAATTTAAGgtcaacatgtgaaaacagccaTTTCACATGTAAAACTGCAAATGTCACATGTTTTTTGTGTGTAATGGAACAGCTCCTTTAAAATCAATAATGCATTGTGTTCTTTAGGTAAACAACTTGTTTGAATAATATTTGAAAGCAGCCTTTCCTTATTAAATAAACACTAGTACTTAAGAGTTTGAACTCTAGGTGTAAAAGGTTGATGTATTGATGTAAAACTGTTTACAACAGAGTGTAAGAAGTGTACAGTATCCTAAGGGAACCCTAGTATAACTCAATACAGACCACCTAGGAACAGATAGTGGGTTGGATCTCTGCACTGTAGGTTTTGATGTGGAAATTGTAAGGTTTGGGGATGGTGATTATGATGATGAAACTTAGTGTCTGTTTGTCTCTTGTCTGATTTGTAAATCAATATGAAAAATGTTCTGGTCATATCTCTGatactgtagcacctacagagcattatgggtactgtagtacatcGTGCTACAGGCATCACAAGCATAAAATAATgactaatacagtatatactaaaAAAATAATACTAAAAAACAATGTACCAACGTACAGTCGAGTGGAACCacctttgtttgtttgtatgtttatttgtttgtttgattATAGTGTTTGGGATAGTGCATGCACTACATGCCTCTGTAGCTGCTGAAAAAAAATGTTATGACAATAACGATGAAACTCTTTCAATAAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685866 lncRNA downstream 60727 36670628 ~ 36670870 (-) True G602018
TU685677 lncRNA downstream 111157 36620115 ~ 36620440 (-) True G601839
TU685663 lncRNA downstream 118577 36612773 ~ 36613020 (-) True G601825
TU685656 lncRNA downstream 124006 36607376 ~ 36607591 (-) True G601818
TU685654 lncRNA downstream 124814 36606449 ~ 36606783 (-) True G601816
TU685991 lncRNA upstream 125229 36860997 ~ 36861227 (-) True G602138
TU685995 lncRNA upstream 128350 36864118 ~ 36864348 (-) True G602142
TU686604 lncRNA upstream 133053 36868821 ~ 36881944 (-) True G602723
TU686704 lncRNA upstream 259283 36995051 ~ 36996002 (-) True G602809
TU686709 lncRNA upstream 268411 37004179 ~ 37009481 (-) True G602813
XM_021609124.2 mRNA downstream 172383 36542391 ~ 36559214 (-) False LOC110527685
XM_036983170.1 mRNA downstream 172383 36542391 ~ 36559214 (-) False LOC110527685
XM_021609125.2 mRNA downstream 172384 36542395 ~ 36559213 (-) False LOC110527685
XM_021609123.2 mRNA downstream 172384 36542396 ~ 36559213 (-) True LOC110527685
XM_036983174.1 mRNA downstream 172386 36538138 ~ 36559211 (-) False LOC110527685
XM_036983181.1 mRNA upstream 2923 36738691 ~ 36823857 (-) False LOC110528947
XM_036983180.1 mRNA upstream 2923 36738691 ~ 36838964 (-) False LOC110528947
XM_036983178.1 mRNA upstream 2923 36738691 ~ 36858143 (-) False LOC110528947
XM_036983177.1 mRNA upstream 2923 36738691 ~ 36858144 (-) False LOC110528947
XR_005052573.1 mRNA upstream 2923 36738691 ~ 36858144 (-) True LOC110528947
TU684989 other downstream 970327 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 1676369 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 1676464 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 1764811 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 2116722 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 1853387 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 1853649 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 1855100 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 1866562 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 2327237 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile