RNA id: TU686166



Basic Information


Item Value
RNA id TU686166
length 459
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G602306
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37103679 ~ 37104137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACAAATattacctcctccacctcctcctaacTGGGAGACCTCGCTCGAGCGCCGGCTGGAGAGGTAGGGGGACACCATGGAAGAACGACGGCTCACTGTGTAGGCAGAGCTCAGGCTGCTGGTGCCACTTCCCCTCCGGTCACTGAGAGGGGGGGGCATGCCAGAGGGTCCGCCGCCCTGCTCGTGATTGGACAGTTCCATGACGCGCCGGTTGGAGAGGAGGGGCGAGGGAGTACACATccctcccatcatctctcctggACAACCTGGAGAAACAAGACAGGATGAGAATCATCAGGTTCAATGACTGGCACAGAAAATACTGCTACAATTTGAGAGTGAATGTCATTTTTTGCATCTATGCACTGTAGTGCATATGTAAGGGGCTTAATACAGTAGTATTCCAGCCACTAGGGGGTACTCTGTTGAAGCCCATTGGAAATAAAGAAATATAGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU686163 lncRNA upstream 5308 37098143 ~ 37098371 (+) True G602303
TU686157 lncRNA upstream 11946 37091314 ~ 37091733 (+) True G602297
TU686156 lncRNA upstream 12609 37090834 ~ 37091070 (+) True G602296
TU686154 lncRNA upstream 17920 37085286 ~ 37085759 (+) True G602294
TU686153 lncRNA upstream 19106 37082947 ~ 37084573 (+) True G602293
TU686172 lncRNA downstream 8468 37112605 ~ 37112810 (+) True G602312
TU686173 lncRNA downstream 9309 37113446 ~ 37113748 (+) True G602313
TU686184 lncRNA downstream 28418 37132555 ~ 37132778 (+) True G602324
TU686189 lncRNA downstream 32740 37136877 ~ 37137121 (+) True G602329
TU686194 lncRNA downstream 37413 37141550 ~ 37141763 (+) True G602334
XM_036983183.1 mRNA upstream 89625 36955176 ~ 37014054 (+) False arhgap9
XM_036983184.1 mRNA upstream 89625 36955176 ~ 37014054 (+) False arhgap9
XM_036983186.1 mRNA upstream 89625 36955176 ~ 37014054 (+) True arhgap9
XM_021609132.2 mRNA upstream 190667 36907551 ~ 36913012 (+) True LOC110527691
XM_021609130.2 mRNA upstream 206916 36868742 ~ 36896763 (+) True LOC110527690
XM_021609142.2 mRNA downstream 160256 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA downstream 160256 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA downstream 160279 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA downstream 160279 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA downstream 160279 37264416 ~ 37342630 (+) False LOC110527697
TU686155 other upstream 12923 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 527607 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2132274 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2344021 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3136924 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 1394894 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1480337 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3022397 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3102432 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 3119038 40223175 ~ 40224171 (+) True G606464

Expression Profile