RNA id: TU686189



Basic Information


Item Value
RNA id TU686189
length 245
lncRNA type intronic
GC content 0.38
exon number 1
gene id G602329
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37136877 ~ 37137121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgatataacaagtgacatcaataagggatcatagctttcacctggattcacctggtaagtctgtcatggaaagagaaggtgttcttaatgttttgtatactcagtgtatgtaagtAAAAGCCCTGGGAGgcgagttgatacaattccaagtctggaaggttaaaaccaccctcagtcTTAGGAAGATGTCAGACTTTGCTTTTCATTCTATGAGTTTTATTTGCCCATATGAAGTATGTTatga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU686184 lncRNA upstream 4099 37132555 ~ 37132778 (+) True G602324
TU686173 lncRNA upstream 23129 37113446 ~ 37113748 (+) True G602313
TU686172 lncRNA upstream 24067 37112605 ~ 37112810 (+) True G602312
TU686166 lncRNA upstream 32740 37103679 ~ 37104137 (+) True G602306
TU686163 lncRNA upstream 38506 37098143 ~ 37098371 (+) True G602303
TU686194 lncRNA downstream 4429 37141550 ~ 37141763 (+) True G602334
TU686195 lncRNA downstream 5152 37142273 ~ 37142473 (+) True G602335
TU686198 lncRNA downstream 8946 37146067 ~ 37146917 (+) True G602338
TU686209 lncRNA downstream 28799 37165920 ~ 37166209 (+) True G602349
TU686212 lncRNA downstream 40837 37177958 ~ 37178316 (+) True G602352
XM_036983183.1 mRNA upstream 122823 36955176 ~ 37014054 (+) False arhgap9
XM_036983184.1 mRNA upstream 122823 36955176 ~ 37014054 (+) False arhgap9
XM_036983186.1 mRNA upstream 122823 36955176 ~ 37014054 (+) True arhgap9
XM_021609132.2 mRNA upstream 223865 36907551 ~ 36913012 (+) True LOC110527691
XM_021609130.2 mRNA upstream 240114 36868742 ~ 36896763 (+) True LOC110527690
XM_021609142.2 mRNA downstream 127272 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA downstream 127272 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA downstream 127295 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA downstream 127295 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA downstream 127295 37264416 ~ 37342630 (+) False LOC110527697
TU686155 other upstream 46121 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 560805 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2165472 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2377219 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3170122 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 1361910 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1447353 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2989413 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3069448 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 3086054 40223175 ~ 40224171 (+) True G606464

Expression Profile