RNA id: TU686209



Basic Information


Item Value
RNA id TU686209
length 290
lncRNA type intronic
GC content 0.32
exon number 1
gene id G602349
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37165920 ~ 37166209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atattatatactgtaaaATGCATTTCAAGAATATTGGTGTCCTGCTTTTGTCCAAAGTAACGGTTAGCAAAATCAGGTAAAATGTTAAAGCACACTTTCTTTAACCTCAATGTCAACTTGTTTTGACATTGTTGTTTTTCACTGTAGAGATGACCCATTTTGAACGTTTTCAGTATATTTTGAATGCTCCCAGACAATGTGATTAATCACGTTTCAAAATAAATTGTGGACAAAAATGACAAAAAGTTAACTAGAGTTAACTGATTAACTCTGACAGCCCTACTTCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU686198 lncRNA upstream 19003 37146067 ~ 37146917 (+) True G602338
TU686195 lncRNA upstream 23447 37142273 ~ 37142473 (+) True G602335
TU686194 lncRNA upstream 24157 37141550 ~ 37141763 (+) True G602334
TU686189 lncRNA upstream 28799 37136877 ~ 37137121 (+) True G602329
TU686184 lncRNA upstream 33142 37132555 ~ 37132778 (+) True G602324
TU686212 lncRNA downstream 11749 37177958 ~ 37178316 (+) True G602352
TU686217 lncRNA downstream 18583 37184792 ~ 37185071 (+) True G602357
TU686257 lncRNA downstream 40183 37206392 ~ 37206613 (+) True G602383
TU686260 lncRNA downstream 42192 37208401 ~ 37208921 (+) True G602386
TU686300 lncRNA downstream 97557 37263766 ~ 37264203 (+) True G602420
XM_036983183.1 mRNA upstream 151866 36955176 ~ 37014054 (+) False arhgap9
XM_036983184.1 mRNA upstream 151866 36955176 ~ 37014054 (+) False arhgap9
XM_036983186.1 mRNA upstream 151866 36955176 ~ 37014054 (+) True arhgap9
XM_021609132.2 mRNA upstream 252908 36907551 ~ 36913012 (+) True LOC110527691
XM_021609130.2 mRNA upstream 269157 36868742 ~ 36896763 (+) True LOC110527690
XM_021609142.2 mRNA downstream 98184 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA downstream 98184 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA downstream 98207 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA downstream 98207 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA downstream 98207 37264416 ~ 37342630 (+) False LOC110527697
TU686155 other upstream 75164 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 589848 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2194515 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2406262 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3199165 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 1332822 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1418265 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2960325 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3040360 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 3056966 40223175 ~ 40224171 (+) True G606464

Expression Profile