RNA id: TU686260



Basic Information


Item Value
RNA id TU686260
length 521
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G602386
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37208401 ~ 37208921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAATATATAGTCAACATGACATTACATGACTGGGAAATCAAAATAAGACTTgcatagaaacaaacaacaaagACACCTTCAGCACCCCTTTCCTTCCAAAACCACTCATATCGACGAATTTTGGTAACGTAGAATGGAGTATATGGAATAGATTAAGCATGGCAATACCTTCTATGAAAAGTTGAAGACGTCTGCATCAGTTTGTTGACTTGATCCCAAGACTTTGGAAGTTTTGGAAGTTTGGGGGTGAGATCTCTTGCGTCCCGCTGGGGGTTCAAGAATTTCCAATaaagctccctctctctctgcgttCTGGCAGACATACAGATGGAGCTGCAGGAATGATCCTTTAGTTCTTTCTTCTATTCCTCCCGTGTTCAATTCACGTCTTTGTCCAATTTGTAGGAGCTTCTTTCCATCGTTTTCTTTATAGGTAATTCTTGAAATCAGTGTGCAGGACAGCATTGAACAAACCCCATATTCGGTAACCAAACTCCCGCAAACCCGAAGTTGGTTGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU686257 lncRNA upstream 1788 37206392 ~ 37206613 (+) True G602383
TU686217 lncRNA upstream 23330 37184792 ~ 37185071 (+) True G602357
TU686212 lncRNA upstream 30085 37177958 ~ 37178316 (+) True G602352
TU686209 lncRNA upstream 42192 37165920 ~ 37166209 (+) True G602349
TU686198 lncRNA upstream 61484 37146067 ~ 37146917 (+) True G602338
TU686300 lncRNA downstream 54845 37263766 ~ 37264203 (+) True G602420
TU686335 lncRNA downstream 137507 37346428 ~ 37346627 (+) True G602455
TU687192 lncRNA downstream 472966 37681887 ~ 37682097 (+) True G603269
TU687275 lncRNA downstream 527803 37736724 ~ 37736960 (+) True G603350
TU687287 lncRNA downstream 535404 37744325 ~ 37744547 (+) True G603362
XM_036983183.1 mRNA upstream 194347 36955176 ~ 37014054 (+) False arhgap9
XM_036983184.1 mRNA upstream 194347 36955176 ~ 37014054 (+) False arhgap9
XM_036983186.1 mRNA upstream 194347 36955176 ~ 37014054 (+) True arhgap9
XM_021609132.2 mRNA upstream 295389 36907551 ~ 36913012 (+) True LOC110527691
XM_021609130.2 mRNA upstream 311638 36868742 ~ 36896763 (+) True LOC110527690
XM_021609142.2 mRNA downstream 55472 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA downstream 55472 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA downstream 55495 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA downstream 55495 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA downstream 55495 37264416 ~ 37342630 (+) False LOC110527697
TU686155 other upstream 117645 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 632329 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2236996 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2448743 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3241646 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 1290110 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1375553 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2917613 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2997648 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 3014254 40223175 ~ 40224171 (+) True G606464

Expression Profile