RNA id: TU687295



Basic Information


Item Value
RNA id TU687295
length 321
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G603370
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37756638 ~ 37756958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tagtgtgtgtagattgatgaggcaaaAAACAATTTGTCCATtttagaaggctgtaacgtaacaaaatgaggaaaaggtcaaggggtgtgaaaactttccGAATTCATAGTATACAATGAGCAAAGTGATCTTGCCGTTTTTatatggctgctatgaaagtgaattgTGTTAGCGtttgatcaggggtgtattcattccaccgattctgttgaaaaacatttcttaaatggaatggggataaacatacctgaatttgtcgaatagaaactctcgtttgcaactgtttgaCTAATGATTAcaacctagatcagctagatgcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU687287 lncRNA upstream 12091 37744325 ~ 37744547 (+) True G603362
TU687275 lncRNA upstream 19678 37736724 ~ 37736960 (+) True G603350
TU687192 lncRNA upstream 74541 37681887 ~ 37682097 (+) True G603269
TU686335 lncRNA upstream 410011 37346428 ~ 37346627 (+) True G602455
TU686300 lncRNA upstream 492435 37263766 ~ 37264203 (+) True G602420
TU687296 lncRNA downstream 1195 37758153 ~ 37758358 (+) True G603371
TU687391 lncRNA downstream 175036 37931994 ~ 37934378 (+) True G603463
TU687412 lncRNA downstream 193708 37950666 ~ 38002305 (+) True LOC110527703
TU687530 lncRNA downstream 341802 38098760 ~ 38099254 (+) True G603599
TU687538 lncRNA downstream 348996 38105954 ~ 38106164 (+) True G603607
XM_021609154.2 mRNA upstream 181128 37469010 ~ 37575510 (+) True LOC110527699
XR_005052731.1 mRNA upstream 221521 37535064 ~ 37535117 (+) True LOC118965405
XM_021609150.2 mRNA upstream 414008 37264416 ~ 37342630 (+) False LOC110527697
XM_036983194.1 mRNA downstream 205930 37962888 ~ 37999638 (+) False LOC110527703
XM_036983192.1 mRNA downstream 213184 37970142 ~ 37999638 (+) False LOC110527703
XM_036983193.1 mRNA downstream 216651 37973609 ~ 37999638 (+) False LOC110527703
XM_021609158.2 mRNA downstream 279038 38035996 ~ 38040937 (+) True LOC110527704
XM_036984429.1 mRNA downstream 371422 38128380 ~ 38160898 (+) True LOC110527708
TU686155 other upstream 665882 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1180566 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2785233 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2996980 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3789883 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 742073 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 827516 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2369576 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2449611 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 2466217 40223175 ~ 40224171 (+) True G606464

Expression Profile