RNA id: TU687792


Basic Information

Item Value
RNA id TU687792
length 2822
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G603836
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37992359 ~ 38002257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggattcaattgagattcaCAATTTGTCACTCAACACACAGTAACCTATAATGTCAGTGGAATTGGGTTTTAAGAATATCATCTTCACAAATTAATAGaaaaatgaaaagttgaaatgtcttgagtcagtaagtagtcaacccctttgttatggcgagcctaaataagttcaggaggacAAACTTGCTTTTAAAAAGaaatcacataagttgcatggactccaaTCTGTGTGCATGATttatgaatgactacctcatctctgtaccccacacatacaaatatctgtaaggtccctcagtgagTAGAGAATCTCCCCAGAAAGACCAGGGAgcagggccggctccaggcataTGCGACATAAACGGTCGCTTAGGGCCCCGACCGCTGAGGGGGCCTCaaccaaaaaataaaaaatatattttaggaaCTCAGTCCCGGGGTctaaacttactgttgagagttagaatagtagaatgcacaaggtgtaagttcaaaatttggttgtgcatcagcagtttttcctTGTTTTATCAGTCACTGACAATTGATCAATTAGcaatgtcagctaacaattttttgATTGGTAAAAATTTTGCTTGGGGCCGACGAAAATACCTGGGAGGTtgtccaatgcctcgcaaagaagggcaccgattgaTAAAtgggtataaaaaaaatattttaaaaaacactGAATATTCCTTTGAGTATGGtgttattaattaggctttggatgatgtatcaatacacccattcactacaaagatacaggcgtccttcataactcagttgccagagaggaagtaAACTGCTTTCATAATGAGGCCAATAGTAATTTGAAAATTTGGATGGATTGACAactttgtagttactccacaatactaaccttgtagaaggaagcctgtaccgaatgaaaatattccaaaacatgcatcctgcttgcaaaaaggcactaaagtCATACTGCACAAAatgtggtaaagaaattaacattttgtcctgaatactgagcattatgtttgggtcaaatccaagacaacacatcactgagtaccactcatattttcaagcattagtggtggctgcatcatgttatgggtatgcttgtcatcggcatgGACAAGATCATTAtttttgggataaaaataaatggaataggtaAAGgtaaaatcctaaaggaaaacttggttcagtctgctttccaatagaCAATGGGAGACAAAtgacaaggccaaatctacagttTGGTTGCTTactaagatgacattgaatgttcctgagtggccatgCTTCAGTTTCGATTTATATttatttgaaaatctatggctagacatgaaaatggttatctggcaatgatcaacaaccaacttgacagaggttaaatcattttttaaagaatgatgggcaaatgttgtacaatccaggtgtgcaaagctcttacacGTGTaattacccagaaatactcacatctgtaattgctgctaaaggtgtttctaactcagggggttgaataattaAAGACATAttagttttatttttcatatttaaaaaagaatgttagaatttttcttccactttgacatgacagagtattttgtgtagattatttaaaaaattcaatgaaatacattttaattccactttgtaactcaacaaaatgtggaaacagtcaagggagttgaatactttccgaaggcactgtacctactgtaaaatatggtggtggatctttgatgttatggggttatttgcttccactggtccggaggcccttgttaaggtcaacgtaATCATGGACTTTACCCaataccaggacattttagcccaaACTTAGTTGCCTCTgctaggaggctgaaacttggcagGAAGTGGATCGTCCAGCAAGAGAATAACCTCatgcacacatcaaaatccacaaataaaTGGTTATAATATTATTTGTTACACAAAATCTCGTTCTCTGAACAATTCAATTcgaataaaataatataatttcctaTTTTTTTTAGTATAcgatatagctcagtatttgaatgatttattttatacagtcatttatgCTCATCTTTATTAAGGGTGTCAgtcatttcagaccccactgtaaATCAATGGTAGGTTGTCATGTTGTGGAAAATAATGTACATGGtggtcacaggaggttggtggcaccttaggacaggctcgtggtaatggctggataggaataaatggaatggtatcaaatacatcaaacacatgggttCCATTTGTTTGATAGCATTGCATTAGCTCCATTCCTGCTAATAGTATGAGTCGTCCTTCCCACAACAGCCTCCAATGATGGTGTTGCATACTGTCTCTAACATCTGAGCATCATCAAAAACGTGTAAACACTATTAATAcatttcatatacagtaccagtcaaaagtttggacacgtactcattcaagggtttttctttattttttactattttctacattgtagaataatagcgaagacatcagaactatgaaataacacatatggaatcatgtggtaaccagaaaaagtattaaacaaatacaaatatatttcatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgcacactcttggaattctctcaaccatcttcacctggaatgctcttccaaccgtcttgaagtagttcccacatatgctgagcacttgttggctgcttttccttcactgtgcggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgatcgtggaggccaggtcatctgatgcagcactccatcactctccttcttggtcaaatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687703 lncRNA downstream 78823 37856518 ~ 37913536 (-) True G603752
TU687661 lncRNA downstream 235265 37756651 ~ 37757094 (-) True LOC110527701
TU687662 lncRNA downstream 238219 37753725 ~ 37754140 (-) True G603713
TU687663 lncRNA downstream 238682 37753406 ~ 37753677 (-) True G603714
TU687282 lncRNA downstream 250566 37741541 ~ 37741793 (-) True G603357
TU687813 lncRNA upstream 62322 38064579 ~ 38065697 (-) False LOC110527705
TU687814 lncRNA upstream 62322 38064579 ~ 38070347 (-) True LOC110527705
TU687891 lncRNA upstream 88583 38090840 ~ 38091169 (-) True G603931
TU687892 lncRNA upstream 89130 38091387 ~ 38091667 (-) True G603932
TU687852 lncRNA upstream 92184 38094441 ~ 38096404 (-) True LOC110527706
XR_005052706.1 mRNA downstream 55983 37935371 ~ 37936376 (-) True LOC118965380
XM_021609156.2 mRNA downstream 59900 37803814 ~ 37932459 (-) True LOC110527702
XM_036983188.1 mRNA downstream 202510 37756561 ~ 37789849 (-) False LOC110527701
XM_036983190.1 mRNA downstream 202516 37756561 ~ 37789843 (-) False LOC110527701
XM_036983189.1 mRNA downstream 202519 37756561 ~ 37789840 (-) False LOC110527701
XM_036983195.1 mRNA upstream 61032 38063289 ~ 38077146 (-) False LOC110527705
XM_021609159.2 mRNA upstream 61032 38063289 ~ 38079634 (-) False LOC110527705
XR_005052575.1 mRNA upstream 90946 38093203 ~ 38096522 (-) False LOC110527706
XM_036983198.1 mRNA upstream 167926 38170183 ~ 38198779 (-) False LOC110527710
XM_036983200.1 mRNA upstream 167926 38170183 ~ 38198806 (-) False LOC110527710
TU684989 other downstream 2231089 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 2937131 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 2937226 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3025573 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3377484 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 586898 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 587160 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 588611 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 600073 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 1060748 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile