RNA id: TU688153


Basic Information

Item Value
RNA id TU688153
length 2513
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G604191
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38523559 ~ 38530447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAAATGTCAAGGTATTTTACATGGTATTTGGTCACATGCACATTGTAAGAAAAAGAAACACATTGTTATCTGTACAAACACTTACAGTAGTCCGTAGGGGGAGGAGCctgtgaaagaaaaaaaaaggcaCCTGGTATGACATTTGACCCTGGTTCACAGATACCACCAGATACACGTTACTGTCCACTTTGCCTGtgaaacagaaatagagagaaacagagaacagACAACGGGACGCCATCCCTCCGTGTGACCTCTAATTGTGTGCACTTCTGAGCAGCAACTCAAAATACACAAAATACACAAATTACACATACCAGTTCTGGTCAGTGTTTGAATTAGGCCTAGATATCAGAACATATTAGATACATTTCTTACAATGTATCTTTAGTAGACAAGGTGTTTCCCAGAGCCTTCGTGAGCAACGTGGCTCTTAACAATCTTAGCACATCTACAGTACGAGTGATCCAGACCACTAGTAGAGCAGCCAAAGTGCACCGTTAGACGCTTTTGTTGTTTGTTGCCATTCCGCGTCACGTCACTTTATTCACAGACCATTTCcgcgaaaaaaaaaaaaatagaatcaCTGGTGTTTAGAGCCAAAGCAGAGGCAAGCGGCAGAGACGTGGAGCTGATAGGCTGAGTGGTTCATTTTCTAATTAGGTGAACGTTTAATCTCGGGTAGATATACAGACGGTCATATCTGCACACTGGGTAGGAAAGTCAGTCGACTTTTTGTGGGGGCGCCGGATAACCAGGAAGTCAATAACTGTGCCCAAATCTCACCTCCGATACACAGCATAATACACCTGTATACAGGTGATCCAGCCAACTGAGAGGTACCGATGGAGACGAGAGAAGAAGCCTAGGAATCTATAGCGAGTGGACATGGCTGTCAGACATGCTTGGTCAGTAGCAGCTCTtccaactggagaggagaggggttctAATTTGGCTGTGTGGTTAACCCTTTGAGACTACGAGGTGAGCATTTTGATTGTTCTCATCGGCGTCCTGTTCCGGAATTAAAACAGCACCTTTGTGACGTCATCAATTAGAACTTTCGGTAACACATTATTTCGGATAGGCCATCTGTAGATGATCAGTAACTATCTAGTAGCTGTCTAGtagccctaacccttaacctaacccaaAAATGaacccttacccttattctaaacctaaccttgGCAAGGAGTTGCCGGTCAACAGATTATTTGTTGATGGTATGACCACAGACGGACTATCCGCACTATCCAAATACAGTGTGACTGAACATTCGGTTGGAATATTAATTCTGCTCATGGTTCTGAGGCTTCCTCCTCTCCTACCATCACAACCGCTATGTTCACGCAGCTCTGTTCTACAGCAAATGCACAAGCAGGGGCACCTTTAAGGTACCACAGAGCTTCCTCGAACAGCTACTGCGAAACACACTGAGCGGAGAAGTAGAAAGGCTGATCCTGGAACAGTGAACAGAGTAGAGCACcacatagttagctagctataggtGATTGGCACAGCTGTGGGTGTTCAACATCCTTCATGTTAAGCCGGGTCCTCCAagggaCATAATAGAGGATTTGGAAAATACAATATTAAAAAGGGAGtcgacgacaacaacaacaaaaaatgcatgATAGTTTGACGTTATTAAAGAAGTCCTAAAAGTCGATGGAGattacatagatattcctctgTGACAAAGGAACATCGATTGTACCTTAAACACATTCAAATGGCTTGAAAAACAAGGCTTTATGGGCTACATACAGAGACTGTAAAACTGGATCTGTGTATAGTATAAACTCCCTCTACCTTCAACTCAAACCTAAACCTAGGCTCAGAGTAACGTGATTGTGTCATCTTATGTCTTGTGTGTTTCTCTTTATCAAACTATTTACATCATGTTAGCAGCATCCGCATGTCTCGTAAGAGAGACACCATTGATTCAGTCTTCAAAGATAGCTCTACAAAAGACATGATTTGAGATTCTCATTGCAGTAGATTTCATTTGGGATACTTTTCTTTTGCTCTATTGGACTCTAACGGCATCAATTTGATCACAGTGCAGTGCACACGTTTCTAAGTCTTTACCAGATAAAGTGCACTCAATAACGACTAGATATATTCACGGGAGAAGAAATGCTGCGAGTTACACGTGGCTCAGTCGCTCACTAGGCATCTAAAGATATTTCCGATCCTCAGGGAGGAGTGTGAGAATTTCACAATTTCTTGGGAATGTTCTACGTTGTGACATTGTCAGTGGGAATTGATTAGAATGTCCCCTCCTAAAAGGGTTAGGAGGGAAGATTCTCTGATCACCGGTGCCTGGAGATAGTGGTTAgccacatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgggaGGGCTAGAGGACAAATATGTTTAACTTAGCAGACAGTAAATCTCAGAGCTGAAGGAAGCCAAGCCCTGCCAGGCAAGATGGATAACCtaaaagcatgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688018 lncRNA upstream 242543 38280540 ~ 38281016 (+) True G604057
TU688016 lncRNA upstream 247337 38276023 ~ 38276222 (+) True G604055
TU687656 lncRNA upstream 254177 38269059 ~ 38269382 (+) True G603709
TU687604 lncRNA upstream 256306 38265550 ~ 38267253 (+) True LOC110527711
TU687601 lncRNA upstream 260155 38260432 ~ 38263404 (+) False LOC110527711
TU688230 lncRNA downstream 54027 38584474 ~ 38594822 (+) False G604258
TU688228 lncRNA downstream 58971 38589418 ~ 38594822 (+) True G604258
TU688242 lncRNA downstream 68437 38598884 ~ 38602222 (+) True G604267
TU688567 lncRNA downstream 190245 38720692 ~ 38727601 (+) True G604567
TU688577 lncRNA downstream 226172 38756619 ~ 38761662 (+) True G604574
XR_005052577.1 mRNA upstream 256213 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA upstream 256213 38260380 ~ 38267346 (+) False LOC110527711
XM_021609166.2 mRNA upstream 260033 38260392 ~ 38263526 (+) False LOC110527711
XM_021609163.2 mRNA upstream 353305 38162615 ~ 38170254 (+) True LOC110527709
XM_036984429.1 mRNA upstream 362661 38128380 ~ 38160898 (+) True LOC110527708
XM_021609174.2 mRNA downstream 159893 38690340 ~ 38704044 (+) True lhfpl5a
XM_021609189.2 mRNA downstream 660634 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 698254 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 698258 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 761209 39291656 ~ 39308642 (+) False LOC110527730
TU688169 other upstream 23897 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 1432803 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1947487 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3552154 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3763901 34759347 ~ 34759658 (+) True G600431
TU688229 other downstream 54027 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 1596087 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1676122 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1692728 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 1700438 40230885 ~ 40231225 (+) True G606469

Expression Profile