RNA id: TU688474


Basic Information

Item Value
RNA id TU688474
length 1381
RNA type TUCP
GC content 0.45
exon number 4
gene id G604484
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38584293 ~ 38639400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtccgaatagttatgtaaatgtgatatttcagttggttaattttttttgtgtgtcaaattgaaaaaaaaaaactgtttttgctttgtcattacggggtattgtgtgttgatgagAGAGAAACTATTCAATCCATTTTTAGAACAAGGCCGTAACGTAACTAAATGTTGAgaaagtcaacgggtctgaatagtttccaaatgCCCTGTAGACTAACTTATCAGAATGTAAGAGAATCACTTATATTGTCGAGAGGATGTATGCATTTGAATGACCTGTTGATGAGTGTGAGGTTACACCCAGCtgtgtagcatggtggtggtggtggtggtggggcagttCTTTAGGACAGAAGACCGTTATCTGTGGATTGGCTAGCTCAGCACAAAGAACTGCAGCTAGTTAATGACATCAGAGCCATTCACTGTCTGCTGTGGTCCCTCTGGCCtgaaaagaaggagagaggggagagagagagagagagagagagagagagagatgcagtcatacaggggagatagaatggagggagagatgcagtcatacaggggagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagcgacagagatgcagtcatacaggagagatggaatggagagagacagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagagagatgcagtcatacaggagagatggaatagagagagagagatgcagtcatacaggggagatggaatggagagagagagagatgcagtcatacaggagagatggaatagagagagagagatgcagtcatacaggagagatggaatggagagagagacagatgcagtcatacaggagagatggaatagagagaaagagagagagagagatgcagtcatacaggagagatggaatggagagagagatagatgcagtcatacaggagagatggaatggagagagacagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagatatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagatgcagtcatacaggagagatggaatggagagagagagagatgcagtcatacaggagagatggaatagagagagagagatgcagtcatacaggagagatggaatggagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688472 lncRNA downstream 8510 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA downstream 13375 38584293 ~ 38588955 (-) False G604484
TU688019 lncRNA downstream 321539 38280490 ~ 38280791 (-) True G604058
TU688010 lncRNA downstream 331400 38270689 ~ 38270930 (-) True G604049
TU687878 lncRNA downstream 334466 38266849 ~ 38267864 (-) True LOC110527712
TU688640 lncRNA upstream 58116 38697516 ~ 38697822 (-) True G604631
TU688687 lncRNA upstream 142358 38781758 ~ 38782013 (-) True G604677
TU688688 lncRNA upstream 143222 38782622 ~ 38782880 (-) True G604678
TU688694 lncRNA upstream 150013 38789413 ~ 38789620 (-) True G604684
TU688716 lncRNA upstream 166824 38806224 ~ 38806443 (-) True G604706
XM_036983207.1 mRNA downstream 102661 38304030 ~ 38499669 (-) True LOC110527714
XM_036983206.1 mRNA downstream 102671 38304030 ~ 38499659 (-) False LOC110527714
XM_021609167.2 mRNA downstream 332803 38264371 ~ 38269527 (-) False LOC110527712
XM_021609168.2 mRNA downstream 332805 38264371 ~ 38269525 (-) False LOC110527712
XM_036983205.1 mRNA downstream 342008 38214031 ~ 38260322 (-) True LOC110528948
XM_021609173.2 mRNA upstream 63837 38703237 ~ 38738350 (-) False LOC110527716
XM_021609171.2 mRNA upstream 63837 38703237 ~ 38757485 (-) True LOC110527716
XM_021609175.2 mRNA upstream 131098 38770498 ~ 38793057 (-) True LOC110527718
XM_021609176.2 mRNA upstream 219468 38858868 ~ 38862874 (-) False LOC110527719
XM_021609177.2 mRNA upstream 223619 38863019 ~ 38866559 (-) True LOC110527720
TU688481 other downstream 4811 38589155 ~ 38597519 (-) False G604485
TU688480 other downstream 4811 38590868 ~ 38597519 (-) True G604485
TU688470 other downstream 7514 38589417 ~ 38594816 (-) False G604484
TU684989 other downstream 2841060 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3547102 35001880 ~ 35055228 (-) False G600881
TU689636 other upstream 423605 39063005 ~ 39068828 (-) True LOC110527723
TU690234 other upstream 1199491 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1584155 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1989849 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2517270 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile