RNA id: TU688811


Basic Information

Item Value
RNA id TU688811
length 2453
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G604786
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38931875 ~ 38934382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTACTTGGTCAAACCGATTCCTTCCTGAACTTCTATACAAATGAGAGGGAACATGACGCCCCACAAGTAAACTTTCACAAGATCATAATTACCTGACACACACAGTTTTGGCAACAATTTAGCAGTGAGTCAGTTCAACACAGAGCACCCAGTGACAGAGGACTGGTCAGAGTACAAATACATAAACAAGTGACTACTTCTTTTAAACAATAAAGGTCTCCACTTCGCTTTTTACAGGAGCGACCAGCGAGTCACTTTGTGGGTGATAAACGTGACCATTAAACACACCAACAGTAATTCATTCAATACTGGCTTTAATCCAAAATGTATCTTTAAGACATTGACTCTCAACACCATGGAAAATCCTGCTTCCTCCAGGATGGGTTCTTTACTTGCTGTAAAATGTTAAGTTTCCCACTTCTTGCAAATCTAGTAGAGATTGACTACGTCTAACTGCCCAACTATGGAATCTGTTCAGGTCTTTCTACATAATTTGGAAATTCATGTAATAATTTAATGTTGTGCTTACCTCAGACTAATTTACTTTATAGAGGAGATTTAAATAAACACAATCGATTATGAAATGAATCAAACCCCACCAACAGCTCTCCCCTCTGAGTGACATGTGTTTATACTAGGTTACACAACCAAGAGGCCGTATATGGGGCCTGTTCTAGAATTGCCAGTTCCTGACTTATGGAACACCATAGCTTTTTTTTCTTCTGGCCAAGATGTGGGAAGATTCTGAGGTGAACACCTTTAACCTCTTTTACAGGGTTACGGTAACCTGTCCTTAACGAACCCCCCTGCAACCCCATGTCAAGTACTACAATAATAACATCATATTGATTGTCTTTGAAAAcattctgctggtcattttgaaTGGGTATTGCAAACACTATGTTCTCTAGATtcttacatcaacacacacacacacacacacacacaaaatataaaacgcaacatgcaggaattaacgattttactgagatacagtacataaggaaatccgtcaattgatatattcattaggccctaatctatggatttcacatgactgggcatagGCCCAGCCACTGAGAACAGGTTTTTCCCCCACAAATGGTgtttattacagacaaaaatattCCTGTTTCATCAGCTGGCCTGCTGGCttgtctcagatgatcccgcaggtgaagaagcctgatATGGAGGTCTTGAGCTGGCGTGGTtgcacatggtctgcggttggatgtactgccaaattctctaaaacaacattggaggcggccTATGGTAGAGAAGTTTACATTttattatctggcaacagctctggtggacattcctgcagccagcatgccaattgtacactccctcaacttgtgacattgtgttgtgtgacaaaactgcacattttagagtggccttttattgtgcacctgtgtaatggtcatgctgtttaattagcttcttgatatgccacacctgtcaggtggatggattatctttgcaaagaagaaatactcactaacagggatgtgaacaaatttgtgagtatggaacattaaaatgttgcgtttatattttagttcaacACAAAGAAAATATCATCAGTGTATTCTCTTAGCTCTGGGAGGCCACAGTAGTACTGCAGTGGGATAATGTGTGATGGCAGTGTCTCTAGAGGCCCAGAGTCGGACCAGGAGAGACAACAAAAATACAGTCCTGTGGTCCCAGTCATGtctgccttccctcctctccaGGTAGACATccacagtagacctgacagtcaCAGCTAAGATACATGGTTGTCACTGCTACAGACAACACCACAGTCTCATAGAAAGATGCTCAAGAGAGAatgagagttttttttttttttttcaagttcAGCAACAAAGAAAACTAACAAATGAAAAAAGTGggtagaataaaaaaaaaagtgctccAATTTTCCACAGTGTATTTCTTCCCTCCCGTATATAGGGAGCATTGCCATGTTGCCACCAATACTGCCAAGGTTTAACCTTTAGCCTCTCTAACCCAGAGAGGTCATGACACCCCGAAGGTCACACTTCTGATGGCCTGCTACTACTAGAGTCTGTTTGGTCCATCAGGGCAGCCTGTGGGGGAGGCCAAAGCCTCGCTTGTGTCCATGTCCATGCTACAGCCTGGAGAGTCGACAGACGAGTCACTGTCGCAATGGTCCATGCTTTTTGGCTGGGGGGCCAGTGGTCCTGAGAGGGGAGGTGTTGTAGGGCTCAGAGGGCCGTGGGGGCTGAGTAGGCTTGGAGGGGGCTCTGGGTCACTGATGCTGGTTTCCACCCCGACAGGAATCCCCAACCCCACAACCCCCATGGCCGACTCAGCAGCTCCTTTGGCCTGTCGAATGCAGTTGAGCCACTGCTGTTTGTTGAAGGCATCGCTGGCTTGGaaggagtgggagtggagctggCTACTGCTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688794 lncRNA upstream 29502 38900722 ~ 38902373 (+) True G604774
TU688720 lncRNA upstream 123633 38808017 ~ 38808242 (+) True G604710
TU688719 lncRNA upstream 124216 38807395 ~ 38807659 (+) True G604709
TU688717 lncRNA upstream 125144 38806515 ~ 38806731 (+) True G604707
TU688702 lncRNA upstream 133984 38797621 ~ 38797891 (+) True G604692
TU688814 lncRNA downstream 5101 38939483 ~ 38939741 (+) True G604788
TU688815 lncRNA downstream 5385 38939767 ~ 38940088 (+) True G604789
TU688816 lncRNA downstream 7579 38941961 ~ 38942183 (+) True G604790
TU688819 lncRNA downstream 12202 38946584 ~ 38946891 (+) True G604793
TU688829 lncRNA downstream 25580 38959962 ~ 38960174 (+) True G604803
XM_021609174.2 mRNA upstream 227831 38690340 ~ 38704044 (+) True lhfpl5a
XR_005052577.1 mRNA upstream 664529 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA upstream 664529 38260380 ~ 38267346 (+) False LOC110527711
XM_021609166.2 mRNA upstream 668349 38260392 ~ 38263526 (+) False LOC110527711
XM_021609163.2 mRNA upstream 761621 38162615 ~ 38170254 (+) True LOC110527709
XM_021609189.2 mRNA downstream 256699 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 294319 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 294323 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 357274 39291656 ~ 39308642 (+) False LOC110527730
XM_021609194.2 mRNA downstream 357274 39291656 ~ 39310234 (+) False LOC110527730
TU688229 other upstream 340581 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 432213 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 1841119 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 2355803 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3960470 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 1192152 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1272187 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1288793 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 1296503 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 1504718 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile