RNA id: TU690525


Basic Information

Item Value
RNA id TU690525
length 4901
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G606412
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40115588 ~ 40125497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTTACTTCAGGTTAGAGAAGGTTTATTCAATTGTAGGTTTATTCAACAAAAGAAAGGCATTAAATCAAAATATTGTAACACATTCCGAGGTTTTACATCTTTAATCTCCAATCAGTAACAATCGATTTGCTCTATATAATGGAGACCTATTCAGAATTACAATGTGACAGACAGTTGTTGACATCTGAGTTGGTTGTGGACATGGATATGAACTCTATACCAGAGAGTACTaaggaagaaaaataaataaaaggcaaCAAAAACAAAATCTTCATAAATATAGGAAAGGGTAGGATACAGCGGTTGTAGACATGAACCATTTCATTGTTTGTTCTCTCCAGTCAGTCAtatgtacatgtttttttttttccagCATCCAGAACCATCCTTTTGTAAAGGCCTCATTCCGCTTCTAATTTGGGACTGTAACAGATGTAAAGAACAGGTGTCAATTCACATGCCATATTTAGCCAACTGTGGTGGTTAGAACTGCAGTAGCAGGTCTACAAAATGtataacataaaaaaaaaatgcagccAGTTTAAAATATTCATATTacacaaaaacatgttttttttgcaaGTGAATAGAGCTGATTGAATCTCCACGGGGGATACTCAACACCTTGGTGGGTGAAAAGCTGCTTGCAATGCTGTGGGTCCTGGTAGTAAATTGCAGTGTCTCGCTGGTCCCTAATGGGCCCGCTATGCCGAGTCAAGGAAATTATGTCGTCCCCCAACTGAGTGCAACTCCACTGTATATGGAGCCATTACAGGACTATTTTATGAGCAGCAGATAGGACTAGCACTCAGACCCTTGCGATTGCAGAGGCCACCTTTCCACCTCCCACTTTAGGGCTCACCATGTAAGGCCAGCCTTGGAGAATATGTACGTCACACCAGGACTCAAATAGACTTTGGTACATATTAAAATAAATGTTGGTGCAACATTTTAGGTGATAATATGGGTACATATAAACTCTCTCTCCAATAAGACCAAAGTCAAAGCAGATGAAATGCCAAGatggatatttatttattttaataaagATATTAAAGAAGTATATTTTGTTacaaagtggccttttatttatTAATTCAGTCAACTTCTGAATTCGGGCCTTGTAAATTGAAGCCCATTTGCCACATGAAACCTTATTCATGCCAATAAGAGTGACTGACCTGTATGCATGTGCATTTACTGTTCCTACTCGTCTTTGTCAGTGTCTGCATGCAAAGGCTCTGTTGAGGTAAATATAATTCATTTAGTGATCATGAACAAATGGCAATATTTCCACACAGCCTGATTTCAAATACAGCAAATATCGAGTGTCTAAATTTGCATGGATAATGAATAATATATAACACCACTAAAagtagaaatacatttgattacaAAAGCATGGTCTATATTATAGATGAACTCGCTTCATACTTTGCGAGACTTCTTCCTCGGGTAAAACCATGTATGAGAAAGCACTTTCCCACTAGgtacagacatcaattcaacttTTATCCCACGTTGATTTAATGTAATTTTATTGAAATGGCGTGGAGACAATGTTGATTCAAGCCGAGTGTGCCCAGGGTGTTCGAAATTAATTTACTTTTACATTTGAtaatttagtcatttagcagaagctcttatccagaaagacttacAGTTAGTTACTTAAGTTGAGACAACCACATaccacagtcatagtaagtacaatTTTCTCAACAAAGCAGTTATCCTACTAGAAGAGATAGTACTAGCAggaaaagacaaaaaaaagacaCCACAACAACTTACTTTTGACCTCCAGCTTGCAGCCGGTGTCGACCTTCCCCAGTGTATTCTCGGCTCTGCAGACATACTCACCACCGTCGTATGGGCCAGGCTTACGGATCTCCAGGGTGCAGATGCCCCCTGTGCTGATCATCCTGTACTTGGGGTTGTCCATGTTGTTGAGAATCATCTTGTTCTTCATCCACATGATCTTAGGCTGCAATGACATATGCGATTTATACGTTTAATATCAattgtttatttcagctttcgTGTACTTGGAGCATGTATTACTATGCACGATACTAAAATCCTACAATGATCAGCGCATCGCAAAGgggacatacactacatggctcGTCGAACatcacattccaaaatcatggccattaatatggagtttgtaccccctttgctgctacaacagcagTTTGTACCCCCTGTGCTGCTCcactctgggaaggcttttcactagttgttggaacattgctgcagggacttgcttccattcagccacaagattgCCATTCAGCATTACTAaggtactgatgttgggcaattaggcctggctcgcagtcggcattccaattcatcccaaaggtgttcgatgaggttgaggtgGGGGCTCTGTGCacgccagtcaaattcttccacaccgatctcgacaaacaatttctgtatggaccttgcttgggcatgggggcattgtcatgctgaaacaggaaagggccttccccaaattgttgccactACTTTGGAAGCACATATTCATCTAGAATCTCATTGTATACTATAGGGTAAAAAATGTttattcactggaactaaggggcctagcccgatccatgaaaaacagccacagaccattattcctcctccaccaaactttacagttgtcactatgcattggggcaggtagcgttgtcctggtatccgccaaacccagattcttccgtcggactgctagatggtgaagcgtgattcatcactccagagaacgcgtttccactgctccagagtccaatggcggcgagctttacaccactccagccgaagcttggcattgcgcaagGTGATCTAACGCGTCGATCACACCAACAGCGTCATTTTCGTTTTGATACACCAGATTTACGTTCATTTCCAATGAAACTCTACGTTTGTAGCAGGGCAAAAaaattgacaaactgacttgttggaaaggtggcatgacagtgccaagttgaaagtcacggagctcttcagtacaggccattctactgccaatgtttgtctatggagattgtatggctgtgtgctcattTTTATGCAGCTGTCAGCAacaggtatggctgaaatagctatatccactaatttgaaggggtgtccacatacttttgtagtgtACCTCTATGATCAATCAATTAAATGCCCCTATAAAGGAAGGAACATCACATAGCCAAGCCTATGTTGGTTTCTAGGGGGAAATTAAGCCCTTTATTTTGAtggtaacatacagttgaagttgaaagtttacatacaccgtttttcacaaatcctgacatttaatcctagtaaacattccctgtcttaggtcagtttggctcaccactttattttaagaatgtgaaatgtcagagtaattagtagagagaattatttatttcagcttttatttctgtcacattcccagtgggtcagaagtttacacgcactcaattagtatttggtagcattgcctttaaattgattaacttgggtcaaacattttgggtagtcttccacaagcttcccacaataagttgggtgaatattggcccattcctcctgacagagcttgtgtaactgagtcagggtcgtaggcctccttgctcgcacacactttcagttctgcccacaaatgttctataggattgaggtcagggctttgttatggccactccaataccttgactttgttgtacttaagccattttgccacaattttggaagaatgcttggggtcattgtccatttggaagacccatttgcgatcaagctttaactttaactaatgtcttgagatgttgcttcaatatttccagataattttcctcctcttgaagccatctattttgtgaagtgcaacagtacctcctgcagcaaagcatccccacagcatgatgctgtcacccctgtgcttcaaggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattatggcctaacagttgtatttttgtttcatcagaccagaggacatttctccaaaaagtaagatctttgtccccatatgcagttgcaaaccgtagtctgtcttttttatggcggttttggagcagtggcttcttccttgcagagtggcctttcaggttatgtcgatataggactcgttttactgtggataaagatacttttgtacccgtttcctccagcatctttacaaggtcctttctGTTGTtctttgcacttttcgcaccaaagtacgttcatctctagcagacagaacgcatctccttcctgagtggtatgacggctgcgaggtcccatggtgtttatacttgcgtactattgtttgtacagatgaaagtggtaccttcaggcatttggaaaatgctcccaaggatgaatcagacatggaggtctaccattttcttttttctgaggtcttggctgatatcttttgatttttccatgtcaagcaatgaggcactgattttgaaggtagtccttgaaattcatccacaggtacacccacAATTggcaaattatgtcaattagcctatcagaagcttctaaagccatgacatcatattctggaattttcaagtcaatttagtgtatgtaaacttctgacccactggaattgtgaaacggtgaattataagttaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaaataaatATTGCTACTGCAACATGTTAACACCAtcttttcacatgtgaggagaataatATCATTTCAACCCCACATGTGAATCTGCAATTCCACAAGTGAAAGTAAGATTTTCATGTGAAACGAAAAATGaatgttttcacatgtgaaaatgcaatTCTACATTTCAAAGtgagattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU690521 lncRNA upstream 6979 40108369 ~ 40108609 (+) True G606411
TU690519 lncRNA upstream 7720 40107638 ~ 40107868 (+) True G606409
TU690515 lncRNA upstream 13285 40102056 ~ 40102303 (+) True G606405
TU690359 lncRNA upstream 88631 39992825 ~ 40026957 (+) True LOC110527739
TU689306 lncRNA upstream 529261 39580045 ~ 39586327 (+) True G605248
TU690510 lncRNA downstream 6828 40127460 ~ 40141972 (+) True G606400
TU690532 lncRNA downstream 15130 40135762 ~ 40140407 (+) True G606414
TU690558 lncRNA downstream 56018 40176650 ~ 40176947 (+) True G606436
TU690561 lncRNA downstream 58549 40179181 ~ 40179502 (+) True G606439
TU690564 lncRNA downstream 66155 40186787 ~ 40187269 (+) True G606442
XM_021609216.2 mRNA upstream 88130 39992766 ~ 40027458 (+) False LOC110527739
XM_021609206.2 mRNA upstream 341864 39433189 ~ 39773724 (+) False LOC110527736
XM_021609203.2 mRNA upstream 738732 39370730 ~ 39376856 (+) True LOC110527735
XM_021609194.2 mRNA upstream 805354 39291656 ~ 39310234 (+) False LOC110527730
XM_021609219.2 mRNA downstream 162921 40283553 ~ 40287403 (+) True csrp1b
XM_021608251.2 mRNA downstream 171408 40292040 ~ 40296179 (+) False tnni1b
XM_021608252.2 mRNA downstream 171410 40292042 ~ 40296179 (+) False tnni1b
XM_021608253.2 mRNA downstream 171432 40292064 ~ 40296179 (+) False tnni1b
NM_001185028.1 mRNA downstream 172796 40293428 ~ 40295414 (+) True tnni1b
TU688229 other upstream 1524294 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 1615926 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 3024832 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 3539516 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 5144183 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 5902 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 85937 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 102543 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 110253 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 318468 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile