RNA id: TU690532


Basic Information

Item Value
RNA id TU690532
length 4443
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G606414
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40135762 ~ 40140407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtCAGTAACAAGCTTTGCAAAATAATTATGACTATTCAGCAACCTGTATTGGCCTTCGAGTGGAAATACTTCATTTCCAAGAACTTCAGATTTGTTTAAGATTTTTTGAAGACCCTGATATAAAAAATGTTGATTTatcttagattttttttttaaatcaagtttTTATGTTGAACTATGAACTTAGATAATATTTCAATTGTGCCCAACTGCAATACAGGCCTAAATCTTTGGACAACAAACTCTATAACCTACACATTATATCCCTCATGTGACCAACCTGAGTTCAAACCCGGGTTTCCTGTGCGCCACAagggtatgttagcccactgagctaaagcccaGGTTTTTCCCACCAATTCAAGGTCAGGTGGTGTCTTGTGGGACCAAGGTTTGACACAAAGCATCCCTTCCATTGTCAAAGGTTACATACTCACTCTGTCTCAATGCAACACTTGCATCAAAATTCACATTAAGGCATAGTCAAACCCTGCCTGGAAAACTATCTCATAATCGTCATTTGGTCCAACTTACTGCAAGACTGGGGCAAGACTGGGTTTGTAAGCTTTCAGAACAATTTTGACCGTTTTCTTTTCTCTAATTGCCAACACCAGTAGAAGTTGCTGCATAGTCCTGATACAAAAGATAGTTAGCAAAACACACAGCACGACAGCGCAACAGCCACAACGACCAGTGAATGAGATGAAGAACGAGCAGAATGGCATTTGTTTGCTTGCATACATAGATACGGGGTATAATATACTCTTCTAAATGGTAAAACAATGCAGTTGTTAATGAGGCTAATCATTAAGATGACAGAAGGTTCATATGGGTCTAGTAGGCTGAGTTAACACAGGCAGCCCAACTCTGATCTTTTTCCTCTTATTGGTCGTTTGGCCAATCCGATCCACTCTTTCTACACTAATTAGGCAACAAGATTAGAATTgcactgcctgtgtaaacgcagccatggTGTCATTGTGAAATGGATTGGCCAAAGGGGCATCTTTTCACACATATGGTTATTCAAGGATTCctttcaatttgtaaaaatgtgaccACACAAGGCAGCAAAAGCAATTCGCTTTAAGTCATCAGATGGAGTCGCTTTACAGTTTGATGCAAAAGCATACCAAAAAACTGAAGTAAAAAGGGAATGTACCATGTTTTAACTTCATCGCGGTGGTTTAGTTGCACTCTGCTTAATAATGACCTTGTGACAGTGTGCACCATTTCTTTCTGTTGTGATAACCGTTGTACAAAGAAAGCAATCTGACATTAAATGGCACTTTATACACAGGTGACTTATTATAAAGGGATTATAGAGTCCCAAAACACAGACTGATTCTCCTACATTGTTTCAGCATCAGCCAGTATGGCCAGTTGTATCTTTTGAGAGCACTGCCGTAACCCACTATACTCTAAAGTGACCCCATTATACAAAGATGTACATCGTCTTTGACTTCTATCTTGTTTTGATCAACCGATCTTTCTATGTTCCATGCCTCCGAAGTGGGAAATGGTCCTTGATCATTGCTATGCGCAAACAGATGATTATTCTGTTTTATGCTGTGTGTCTGAAAGGTCATAACCTAAAACCAAAGGCGAGCAAAGcaatagtaccagtcaaaaagagGGGAGAGCACCATTGGTTGCTACAGTGGATGAAAGACTGTTATTAATAGCAGAGTTAAACCTGTGTCTGACGAAAAGGAtttgtggagtgcaacagagaACTCTAAATAATGATGTTCAACTCACCCCGGGGTCTTGGTAATATGCCCAAATACATGTTTTCTACAAGGAATGAGACCGTAGCTTTGGGAAAAGGCTATTTTCGAAAGCACCTAAATGTTCTGCGATGTTATACGGCTACCACATTGAGTAAAATATCCACGTGTACATTCTTTTTTAAGCACTTTTATGCTCTGACCCCACACTAGACTGTCAACATGCAAGATTACAGTAAAGTATTTGGATCAGCATATTAGGCATTTGCGCCATGCGACTAGTGTAGATAAAATAACTGAAATCGATATTGGAAATAAAGCATTGAGCAAAATTAACTATACCGAATCATGTCGTGGAATAGATTAGACCATACCTCACCATATTCAAAATAAAAGCCAAGCAATATCTGAGCCAGAAGCAAATAGTAGTTGCTTATGCgttattccccccccccaaaaaaaactttCTCAGTAATACCTGATTTTATATGTTGGTAGTGCTGGCGCGGCCTTCTATCTTCAAACGGATAGTTGGATTTCAAATCTATGTCTGTATGTCAGTTCAGTCAAATTAATTCAAATGTATGCTGCTTGCAACTAAATGAGGAACTAGTACCACAGAAGCTGAAATGTAGTATGTACTGATGACATCTTTAAATGTGTTGGTTAGAGTGGACAGCATTTGTCATTTTGCAATGAATGATAAGCAAAGATATTAACCATAAGGAAATAACCATGTGTCCGTGTGCTGCTCTGTTCAACCCTGTTTTCTTCACTTGACCGTGAAAGCCTGATCCCCACCATCTAGACTACCTGGAACACATTGTTTATCCCTCAAATATAGTTAAGTGACATTAAAATCAACCCTGAACTACCCACAGTTGacctgcaaaaaaaaaatatataaatcagCTGGCGGGTGGAATGAACACATTTCCTATCAACGGTTGTGATGGTGGAATACACCATCGTGGAAACAGGTGCTGCGTGACTGAAATCCCCGGTCTGGAAGGATTTTGGAGTCCATGTGGACAAGGACAACAACCCGGTATGGACACAGCCTGCAAAAGTGCAAGCAGGTATTTGTTTATGTTAATTCAGTTAATATAAGTTCATTATTACAATAATTCAGGCTTTCATTTATTTAGACCATACACAGGCCATATACAGTTTGGTCCTATGAGGCTGGTAAACGTTTGAGTAGCCAATAGCCTACTGGCTATTtttgcagcctacagcctattcAGTTATGGGAAATGTTTACTTACGTTTGAATGTAAAGGTATTGTTTTGTTATGTCGGCTATAGGCTTTCGTCAAGTAAGAAGAAGGCTAATTAAATAGGATCCTGTTCAAAGCGATGTGAGTTGTCAATGTGCCGCATTGCATTGTGAAAATAAGAACATAGGCCTTAATTCATGGCATGGTTTCATTTTATCCAAACATTGAACAGACAAATGAATTCCTGCAGGGAATGGGAATAGCCTGAGGggtaaatgtggaagacacacctcagttgaatgcatttctgtacaacttcctaggtatccccctctcccttactACTCTGGAGTCATAAAAACAGTCAAACAAATATATGTCATTTGGAGTGTCATGGATCGTCTCTCGGAAACAACTCTATGCAGAGGAAAATCTGTCCTGATGTCGGATATCGGGTGAGGCTCGGAAATGATGTGGACGGGAGCGGGTGCGGCTCCAAAATAAACTGACCTGTGCAGGACTGCACTGAACTAGGCGTGGGGGGCAAAAAGTCAATGTCCTGGCACTCACTACTCTGATCTGAGGCGATGGTTATGAAGCAAAGCACCACTGTTGTATACTGCTGTTCATCTTGAGGTTATCATAAGGAATATATTTATTAAGGCATTCAGTATGTTTGGTCACAGAGTCAAAAACAAGTTCACCTGGTTATGTATAAAGAGTTGCATATGTCTAAGATTTGGCCTTCAAATATTGATTGATGGATATGTATTCAGGACCAGGACTATTCAACCTGACGAGCCATACAACATGCCGCCATACTCTTTCCGATAAGCACAAAACGGGGTCTCCAACTGACTTAATTGTACATGCACACTGCAGGCCATGTTGCTGTTGCTGAGCAAAAGTTGACAAGCAAGAATGGTGCTATTTTGTCATTTGAACTTGCTGTTGGAAGACTCACCTGCTTAGACCAATGAGAGATGAGGATTCATTTCTAAAGTAAGAGTGATACTTATTATCTCGATAATTAGCACCTGTTTCTATCGAGGGTAGCAGTGATAGAGAGAAGGCTTCAGTAAAGAAAGAGAGACTTTATAATGTGTATTGTGAATATAACCTCTAGTTCAAGAAATCAAAAATGTTTTCTCTCACTATAATATATGTTGGTATGACTTGGCATGATTGAATACAATTTCAAAACATCAAAACAAAATGGCTTCTCATTCAACCatatgtagtgtgattgttgtttgCGGAGATTAAAGATAAGGTCCAAAAGGAGCAGAAAACTATATTGGAGTTTTTGTTCCTGAATATTATGAACTGTGTATACTAGAGCTCACATAGGGGTAAATATTTAGGGGCTATTTGAAGGGCTAGGTTTTGAGTCTACAGTTGAAGTTCACGTTCAAAATGTAGGGAGGCTGGGGTCCATTGTTTCTCTGTCCGGAGATTCAATGCAGTTGGCTGCCTCTTGCAACTTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU690528 lncRNA upstream 10265 40115588 ~ 40125497 (+) False G606412
TU690530 lncRNA upstream 10265 40115588 ~ 40125497 (+) True G606412
TU690525 lncRNA upstream 15130 40115588 ~ 40120632 (+) False G606412
TU690521 lncRNA upstream 27153 40108369 ~ 40108609 (+) True G606411
TU690519 lncRNA upstream 27894 40107638 ~ 40107868 (+) True G606409
TU690558 lncRNA downstream 36243 40176650 ~ 40176947 (+) True G606436
TU690561 lncRNA downstream 38774 40179181 ~ 40179502 (+) True G606439
TU690564 lncRNA downstream 46380 40186787 ~ 40187269 (+) True G606442
TU690572 lncRNA downstream 55494 40195901 ~ 40196105 (+) True G606450
TU690584 lncRNA downstream 79847 40220254 ~ 40220539 (+) True G606462
XM_021609216.2 mRNA upstream 108304 39992766 ~ 40027458 (+) False LOC110527739
XM_021609206.2 mRNA upstream 362038 39433189 ~ 39773724 (+) False LOC110527736
XM_021609203.2 mRNA upstream 758906 39370730 ~ 39376856 (+) True LOC110527735
XM_021609194.2 mRNA upstream 825528 39291656 ~ 39310234 (+) False LOC110527730
XM_021609219.2 mRNA downstream 143146 40283553 ~ 40287403 (+) True csrp1b
XM_021608251.2 mRNA downstream 151633 40292040 ~ 40296179 (+) False tnni1b
XM_021608252.2 mRNA downstream 151635 40292042 ~ 40296179 (+) False tnni1b
XM_021608253.2 mRNA downstream 151657 40292064 ~ 40296179 (+) False tnni1b
NM_001185028.1 mRNA downstream 153021 40293428 ~ 40295414 (+) True tnni1b
TU690507 other upstream 1312 40126534 ~ 40134450 (+) False G606400
TU688229 other upstream 1544468 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 1636100 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 3045006 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 3559690 36573887 ~ 36576072 (+) True LOC110527686
TU690574 other downstream 66162 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 82768 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 90478 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 298693 40439100 ~ 40440632 (+) True LOC110527751
TU691186 other downstream 493774 40634181 ~ 40634439 (+) True G606977

Expression Profile