RNA id: TU690856



Basic Information


Item Value
RNA id TU690856
length 249
lncRNA type intronic
GC content 0.47
exon number 1
gene id G606708
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40433273 ~ 40433521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaccatagtccctctgcccaagaacgccaaggtaagcTATCTAAATTATtatgccccgtagcactcacatctgtagccaataaatgctttgaaaggctggtcatgactcacatcaacaccatcatcccagacactctggacccactccaatttgcataccgccccaacagatccacagatgacgcaatctctattgcactccacactgccctttcccatctgtacaaaaggaaaacctacgtgaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU690853 lncRNA upstream 3371 40429617 ~ 40429902 (+) True G606705
TU690847 lncRNA upstream 16204 40414740 ~ 40417069 (+) True G606700
TU690815 lncRNA upstream 72757 40358825 ~ 40360516 (+) True G606670
TU690801 lncRNA upstream 81514 40351296 ~ 40351759 (+) True G606657
TU690627 lncRNA upstream 151340 40281452 ~ 40281933 (+) True G606502
TU690807 lncRNA downstream 15935 40449456 ~ 40449830 (+) True G606662
TU690879 lncRNA downstream 47958 40481479 ~ 40481775 (+) True G606730
TU690881 lncRNA downstream 52351 40485872 ~ 40486080 (+) True G606732
TU690883 lncRNA downstream 53918 40487439 ~ 40487693 (+) True G606734
TU690885 lncRNA downstream 54514 40488035 ~ 40488271 (+) True G606736
XM_021609226.2 mRNA upstream 118826 40305122 ~ 40314447 (+) False tnnt2b
XR_002474163.2 mRNA downstream 5358 40438879 ~ 40457742 (+) False LOC110527751
XM_021609249.2 mRNA downstream 40245 40473766 ~ 40481140 (+) True LOC110527752
XM_021609250.2 mRNA downstream 60132 40493653 ~ 40506197 (+) False LOC110527753
XM_036983248.1 mRNA downstream 65929 40499450 ~ 40506453 (+) True LOC110527753
XM_021608267.2 mRNA downstream 249485 40683006 ~ 40707849 (+) False ngfb
TU690594 other upstream 202048 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 209102 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 226376 40206569 ~ 40206897 (+) True G606452
TU690507 other upstream 298823 40126534 ~ 40134450 (+) False G606400
TU688229 other upstream 1841979 38584474 ~ 38591294 (+) False G604258
TU690810 other downstream 5579 40439100 ~ 40440632 (+) True LOC110527751
TU691186 other downstream 200660 40634181 ~ 40634439 (+) True G606977
TU692153 other downstream 1029303 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1393690 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2387435 42820956 ~ 42821245 (+) True G609436

Expression Profile