RNA id: TU691084


Basic Information

Item Value
RNA id TU691084
length 1638
lncRNA type antisense_over
GC content 0.41
exon number 5
gene id G606877
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40493877 ~ 40506465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTTAAATATGCTTTATTTACAGATAGGGGCCAGCTTCAACACtcaagacattatttacaaatgaagcaagtgtttagtgagtccgccaaattcgaggcattagggatgacctcttgataagtgtgtgaattagaccattttccttcCTATCCTGCTAACGAttccaaaaaaaaatgtttaattaaGACATTTGGCCAGGTTAGGAGTAGACTGACCAGGCACTGTTTGGACTGCCAGACACCATGTTGCAAGGTGCAACTAGAGTAGATATTCAGGAAAAGTTTATTTGCACTGTCTGTGAAGATAACATTTTAGAAACAGAACATTGATTACATCAAATCATATTACATTTATCCACAAGATGTCACCATTGTGTCATGAATGGCAGTAACCAATCTCTCCACCCCTTGGATATTGGTAAACGTGCCAAACACAGCAACAAATAAGAGGTGGAATAGAGGCGTCAGATCGGAACTTCTGCATGGTGCAGTATGCAGCACACCAACAAATGTGTTATTCTTAGAACTAGGGATGTAGTTGCGCAtatgtagatttaaaaaaaacatattggtGTAATTTCAGTCTAAATATTTGCGGTAGTTAGACACCAAGTAAACAAAATATATTCTACCAGTTAagtacaattttaaaaaatcacaaaTTAGACTTGCTGATTCTAAACAATTGTGTCCACAGTAAAACTCATGCTATTCAATGAATCAAGGTTGAAAAACAGAAAACCCATGCCAGCTGTGAAATTCAGGTCTCCCAGGTGTTTCCAGGTCTTCATTTCTTATAATCCCACAAGGTTTCCCCTTTTCTTGCACGACCGGCAAATTCTAACTGCCACAAAAAAATATGCAGTTCGGTACTCAAAATAAACACCATTGTTCTGCCAGACTTTAAGTTTGTCTCAGGCAATGGTCAATATTTTAGTAGGCTGCTGGCTACCGTGTTTGTGTCATTGTAACTTTAACATTCCTACAATACtggacagttgtgtgtgtgtgtgtgtatatatatttttaaaaagaaaCTTTGGATTTCTGGTAACAATTTCAAATTTTATTGTTTTTTTCACTTCTCGCGGAAGAAAAATTAATCAAAGAGGCCGAATCCCATGTCGTCATCAGATCCCTCTTCAGattcctctttcttctcctcctttttctcttccgCAGCAACAGGAGCAGTGCCAGCCACAGCGCCAGCTGCAGGAGCTGCCACAGCACCACCTGCTGGCACGGAGGCCAACTTAGAGAGGCCAGCATTCATGACTTCGTTGATGTCTTTTCCATTTAATTCATTGACAACCTTGTCTAGGCGCTGCGCTTCGGCCTCGATTCCAACACTCCCCAGGATGGTCTTGATGTCCTTTGAGGAGGGGCTGGTGTTGCCACCGAGCACAGCCAGGAGGTAAGCGGCCACGTAACGCATTCTATTATACTGCAAACACTGAATCAACTGTTTATGGTCTAAAACGTATTATAAAGATGAACTTACTTTAAGTCTATAGCGACACGAAACGTCAGTCACGCTGAATTttctggaagggagagaggggaggagtctCGCGTCTTCTTCTTCGATGGGATTTATCGGCAgttggcatccaacgttatggtgtattaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691081 lncRNA downstream 1999 40491638 ~ 40491878 (-) True G606875
TU691060 lncRNA downstream 25422 40468171 ~ 40468455 (-) True G606854
TU691059 lncRNA downstream 25828 40467798 ~ 40468049 (-) True G606853
TU691050 lncRNA downstream 36184 40457032 ~ 40457693 (-) True G606845
TU691040 lncRNA downstream 44054 40449262 ~ 40449823 (-) False G606842
TU691092 lncRNA upstream 7575 40514040 ~ 40514256 (-) True G606885
TU691097 lncRNA upstream 10015 40516480 ~ 40516915 (-) True G606890
TU691098 lncRNA upstream 10787 40517252 ~ 40517621 (-) True G606891
TU691101 lncRNA upstream 13236 40519701 ~ 40520774 (-) True G606894
TU691125 lncRNA upstream 44625 40551090 ~ 40551371 (-) True G606916
XM_021609248.2 mRNA downstream 39232 40452385 ~ 40454645 (-) True LOC110527750
XM_036983244.1 mRNA downstream 54823 40418035 ~ 40439054 (-) True LOC110527748
XM_036983243.1 mRNA downstream 65476 40418035 ~ 40428401 (-) False LOC110527748
XM_036983241.1 mRNA downstream 65629 40418035 ~ 40428248 (-) False LOC110527748
XM_036983242.1 mRNA downstream 65630 40418035 ~ 40428247 (-) False LOC110527748
XM_021609251.2 mRNA upstream 1277 40507742 ~ 40513295 (-) True LOC110527754
XM_021609252.2 mRNA upstream 53893 40560358 ~ 40562952 (-) False LOC110527755
XM_036984481.1 mRNA upstream 53893 40560358 ~ 40562952 (-) False LOC110527755
XM_021609253.2 mRNA upstream 79443 40585908 ~ 40596388 (-) False LOC110527756
XM_021609254.2 mRNA upstream 96986 40603451 ~ 40612049 (-) False LOC110527758
TU690660 other downstream 269710 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 652546 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 1425049 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 1854477 38602330 ~ 38639400 (-) True G604484
TU688480 other downstream 1896358 38590868 ~ 38597519 (-) True G604485
TU691182 other upstream 122784 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 650205 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 650205 41156670 ~ 41348899 (-) False LOC110527764
TU692186 other upstream 650205 41156670 ~ 41348899 (-) False LOC110527764
TU692187 other upstream 650205 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile