RNA id: TU691133


Basic Information

Item Value
RNA id TU691133
length 450
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G606924
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40564908 ~ 40565357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgAGTAATATTTaatgaggacttgtgaggcgtctgtttctcaaactagacactctaatgttctggttagagtcagtttgcgctgttctgtgaagggagtagtacacagcattttatgagatcttcagtttcttggcaatttctcacatggaatagccttcatttctcagaacaagaatagactgatgagtttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaatgcTCATACTCCAGATactgaactagtctaaagaaggccagtttaattgcttcttcaatcaggacaacagttttcagctgtgctaacataaatgcaaaagggttttctaatgatcaattagacttttaaaatgataaactattggattagctaacacaatgtgccattggaacacaggagtgatggttgctgataatgggcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691131 lncRNA downstream 3029 40561650 ~ 40561879 (-) True LOC110527755
TU691128 lncRNA downstream 5489 40559144 ~ 40559419 (-) True G606919
TU691095 lncRNA downstream 10809 40553670 ~ 40554099 (-) True G606888
TU691094 lncRNA downstream 11701 40552817 ~ 40553207 (-) True G606887
TU691126 lncRNA downstream 12853 40551743 ~ 40552055 (-) True G606917
TU691138 lncRNA upstream 8793 40574150 ~ 40574350 (-) True G606929
TU691085 lncRNA upstream 20768 40586125 ~ 40587539 (-) True LOC110527756
TU691086 lncRNA upstream 38982 40604339 ~ 40610676 (-) True LOC110527758
TU691162 lncRNA upstream 51688 40617045 ~ 40617248 (-) True G606953
TU691437 lncRNA upstream 207913 40773270 ~ 40782286 (-) True G607213
XM_021609252.2 mRNA downstream 1956 40560358 ~ 40562952 (-) False LOC110527755
XM_036984481.1 mRNA downstream 1956 40560358 ~ 40562952 (-) False LOC110527755
XM_021609251.2 mRNA downstream 51613 40507742 ~ 40513295 (-) True LOC110527754
XM_021609248.2 mRNA downstream 110263 40452385 ~ 40454645 (-) True LOC110527750
XM_036983244.1 mRNA downstream 125854 40418035 ~ 40439054 (-) True LOC110527748
XM_021609253.2 mRNA upstream 20551 40585908 ~ 40596388 (-) False LOC110527756
XM_021609254.2 mRNA upstream 38094 40603451 ~ 40612049 (-) False LOC110527758
XM_021609255.2 mRNA upstream 168535 40733892 ~ 40749263 (-) True slc25a55a
NM_001124543.1 mRNA upstream 188892 40754249 ~ 40756219 (-) True tshba
XM_021609262.2 mRNA upstream 238696 40804053 ~ 40816448 (-) False slc16a1a
TU690660 other downstream 340741 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 723577 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 1496080 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 1925508 38602330 ~ 38639400 (-) True G604484
TU688480 other downstream 1967389 38590868 ~ 38597519 (-) True G604485
TU691182 other upstream 63892 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 591313 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 591313 41156670 ~ 41348899 (-) False LOC110527764
TU692186 other upstream 591313 41156670 ~ 41348899 (-) False LOC110527764
TU692187 other upstream 591313 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile