RNA id: TU690940


Basic Information

Item Value
RNA id TU690940
length 5693
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G606779
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40586130 ~ 40593441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACCTACATAGTCACATCATGTACAGTTAATGTATAGGATGTGTGTTGTGGACAAGGTGGTGCATTAGAGGGGAAGTGTGTTACAGTAAGAACACAATAACATAATGTTGTTATAATGTAAATGGAAGCATCAACAAGCAGGGTTCCAGACCCAGATTATTGTCAGAGTCAAGTTCCTTTCCAACATGTTTCATTTCAATTGAAGACACAAGACAGGAAATGAACATGGTAAGGGCAGAGGGAGGGACCAGGAGATAAGAACCTCACTTCTGTCTATCTAGCGAGGCACCCTGAGTACAAACTGCGGCAATGGTAGTAGATATTTAGGCCTAAAAACGTAAACGGGTCTTTCTCATCCCCACCGCCAGATCAGACACATTAGAAACACCTTAGACATTAAGAATCAAACCAATATTTACCAAAGGGTAAATAAGACTGAATCCATTTACCATGTAATTTGCACTGGCGAAACATCCCCTGCTCAGCTATTACTCTCATGTGCCCTAAAGACCACTATGAAAAAGATGTGGAAAGGCAGCAGACTCAGCAATGTCATGAGAGACCTAAGAACTGTGTAGTTaagagttgctgcacagctacaTACTTCAGCTGTTGGCAATATATAAACCATCTCTCCTTCGAGTACGAGGAAAGAATTTAGATAGCGCTCATATTTTGGGATTGAGGGATGCATCTACCACAGATATACTACTGTACCTCCATTTGTCCTGCCAAATGGCTAGGGTATTAGGCGCATGCATGTCTTTGGCACTCTGTCCAACAGACAGTCCCTGAAATGGGGCTACCCCAACAGTGCTCGAAAATAAACAAGTGTCATTGTTCATATCATAAAACAAACATAGCAACGATCTGCATATCTTCAAGGATTATCGGATTAACGCTATCATCTCCGTCATGGTCATCCTCATCTCTAAATCGTCAGCTGAATGTCAATTCCCCTTCTTATACGTTCCAGATTGCTTTGTTATCACATTTAAAAGTACGTAAGTATATATTGAGATAAATATAGGTATCCTATTAAATAGTTTTCATAGGCTTTTTCACAGGTTTCCTTGAACTTAAATACATGCTTCTGTGAATGTATTGAGGTCATGCAACACTAGGAGAGTTAGCATTCAGTTAGCCTTCTTGTATTGACCGCAGTTTAGGGAGGAAGCATAATTTTTTACATGTCCCATTAGCTGTGCCAATAGCTCATCGTGAAGACACGATGGACACAGTTGTACAAGACAGCCGTGAGGCGAGGCCACACAAGTCTGTCTGTAACTGAGATTAATGCTGCAACTAAACTGCATGAGTACTGTAAGTAATTAACTAATGCATTTTGCCTCAAATTTAAGCTCAGCTGCAATGACTGCGGTATATAAACACCTCTATGTTTTCAGCTCAGCGGTGTGGCTGGGGCAAACGTCAGGAACACAATATCCTCCAAACTATAGGGACGGTTTGGGGCATGGTAACCTTTTAGACACCCTTGTAGCTTGTTAGATAATAACCTACAGTGCCTATcataagtatttacacccttggatttcttcacatttgattgtgttacaaagtgggaataAAATAGAAGTaatttcttttatttttttttgcgtCAACGAtcgacacaaaatactctgtaaagtcaaagtggaagaaaagttCCAAAATGTTTTAAAGATGAATGAAAAATAAAGCACTAATATACAGTACTTTGATTAGACAAGTATTCACCCCGAGTCAACACATGTTATAAACAtgtctttctaggtaagtctctgggagctttgtacacctggattgtgcaacatttgtccattattattttcaaaatcatTCAAGCTTTGTCAAGGTGTGGGGGATCATGGCTAGACTGCAATTTTCAAGTACTGCCATAGATTTTCGAGCAGATTTAAGTCagaactgtaacttggccactaagaacattcactgtcttcttggtaagcaactccagtgtaagaTTTGCacttgtgttgttgtttattgtcctgctgaaaggtgaattaatctcccattgtctggtgtaaagcagactgaagcaggtttttctctaggattttgccagtGATTAGCTTCATcccatttctttttatcctgaaaaactcagcAGTCTTTGCCTatttcaagcatacccataccatgatgcagccagtGATGTGTTCTGTTGCATTTTCCCCAAACATGTTTTCTTTCTGTATTAatgtagtgccttgttgcatacatgatgcatgttttggaatatttatattctgaAAATGTGGATTCTTCTTTTTAAGTCATTTTTGTgcagtcactacaatgttgttgatcagttctctcccatcacagccattgaactccgTAGCCGTTTTAAAAAATCACCAATGGCATCAGggtgacatccctgagcagtttccttcctgccCTGCAGCTCAGTCTAGAAGGACGACTGTATGTTTGACGTGTCTAGGTGATTGAATACCTAATCTAACAGCAGAATTATTCACTTGACCATGCTTacagagatattcaatgtctactttgttattgttacccatctaccaatcccTGTCCTTCTTCATGAGGCTtctgaaaatctccctggtctttgtagttgaatctgtgcttgaggatcaatacttgactgagggaagttacagatgttgtatatatgggggacagaggaaggggtagttATTCAAATGTCATGTCAACCCCTATAATTTCACACAGAGCGAGTCCATGTCAAtgattatgtgatttgttaagacacattttactcctgaactcattTAGGCTTGAGTAAACAAAAGGAGTGAATACTTTGTCAAATtgtgtttaaatgttttttttttactctgacatTCTGGAGTATTTTATGTAGATCATTGGCTAAAAAAAATCACAATGAATtctatttcaatcccactttgtaaggcaacaaaacgtGAGCAAATCcatggggggtgaatacttacatGTATGATACCCACTTTATAGTCACCCCTGCACATGTATGATAGATGGTTATAGAGAGCAAGACAATAAACTGTGTCTTTGGAGCAATGATAGTTGTGTGAGTGAGAACACTCATTCAGTTAAGAACTCCATGCAACAATCAACTGGCTACAGTTACTACCTACATTACCTACCGTATCTAGCTACAGTATCGGTTACAGTCACAACTACTTACCTATCTGTATGTAAATGAGTACACTTTTTTTTATGAAAGAGGAAGAGACATTCACTTTGTCCTCAAAGCTGCAGTAAGACTGGTTCAGACTGATGCAGGTGAGTGGAGGAGGGATGCTTGCATTGCAATGTACAGTAAACACATACATCATGTAAGACTAAAGCAGTGAAAAGTCAAGGACATTCTCAGTCATTCATCAGATACTGATGTCTACTGAAGAAAATAAGTCAAACCATCATAAGCTTATGGAGCTGATATCCCGTAAATCGTGCGGATTGCTACTACAGTATCACACTCCTCAGACTCAGGTCATGACAGGCCTCAGCAGCGCAGCATGCCTGCTTAATGCTCACATGTTCTGTAATCTCCAAGTAGTTCACCACAGAACGGGTTTGTTTCGCTTGCTCCAGGAAGCAGCATATCGTAACACGCAAACAAGACTCTTCAGAAGCGCAGTGTGCCTTTAGCAATGAAGGGAGACCAGGGTAGGGGCCGGCACAGGGGGGCTGAAGCAGTGTTGGTGGTGTGGTTATTCTGGAAACTATAAATTCCCCTTTTTTTAACTACATTTCTCCTCTTTTTGTACTACTGTTGTGAACAGGTTATTTGAAAAAGTCACACTGACAAAGCCAACTCCATGCAGACATCAACAAGCAAAATGTGGATTATAAGATTTTAAATCTGACAGAAGGTCAGTTTGAGGGCAAGGTGTGACGAGCTAACAGGGGGAGTTAGGGGAGGAGTGAGCACATGGTCTCTGGTGTTTCTCACCACTCACAAAAGACGACTACAGGTATACGTCCTGAATCTATTGCCTTGATATTCCAGCAGCACATGTGAAAAAGGAGGCTACACACCTGTCCTATCCTTTGACCCCTCAACCTCACCGAGAGGACAATGCCTGCCGGCTGGCTACACGTCTGTGAGCATTTTGGTGATGTTGACATAGTTTGTGTTGGCCAGCGTCGTGCAGTTGGCCTGAGTCTTGAGGTTCTCTTCAGGGATGTCCTCAATAGTGTTGTTCACCCCTTCCTGGATCTCCATGTAGTCTGATTTACTGATGGTTGAGCCGCTCCGGCTCTTTTTCAGCTCTTCATTCGAGTCCTCTTTGGTGACTGGGCCTAGGCACTGGGCCTGCTCCTCGCCCTCTGTCTCACGGTGGTAGAAGTAGTTGAAGTTGGAAACAATGACAGGCACGGGCAAGGCAATTGTCAGCACACCTGCAATGGCACAGAGGGAGCCCACAATCTTGCCACCAATGGTGGTCGGGACCATGTCACCATACCCTACTGTCGTCATAGAGACAACAGCCCACCAGAAGGCGTCTGGGATGCTTTCAAATTGCGATTCGGGCTCATCAGCTTCCGCAAAGTAGACAGCACTGGAGAAGAGTATGACTCCAATAAAGAGGAAGAAGATCAGCAGACCGAGCTCCCTCATACTAGCTTTCAGGGTTTGGCCCAGGATCTGAAGCCCCTTGGAGTGTCGCGAGAGCTTGAAAATTCGGAAGACTCGCACTAGACGGATGACCCTGAGAATCGCCAGGGACATGGCTTGCTGACCCGCCTGGCCATCCTCTGGTTTCTCAGCCAGCTCTGTGGCCAGGGTGATGAAGTAAGGGATGATAGCAACAACGTCAATGATGTTCATGACGTTACCAAAAAAGCCCGATTTGCTGGGGCAGGCGAACAAGCGCACCAGGAACTCAAAGGAGAACCAGATGATGCAGAGCGTCTCCAGGATGAAGAATGGGTCGGTGAAGTAGGTGGACGTGAAGTAGATTGTGGTGTTGGTATTGGTGTCAAAGACACTGTGCGGTTCGTCGTCGTCATTGcggaagatgggcagggtttCCAGGCAGAAGCTTACGATAGAGATGAGGATGACCATGACGGAGATGATAGCGATAATCCTAGCGGGACCTGAGCTCTCTGGGTACTCAAAGAGCAGCCACACTTGCCTCTGAAACTCATTGTCAGGAAgtggcctctcttcctccttgACGAAACCCTCATCCTCTCTGAAGAGCTCAATGGCCTCATCCCCCAACTCATAGAAACGGATCTCCTCTGAGAAAATATCAAGGGTCACATTGGCCGGCCGCCGTAGCCTCCCCCCTGACTGGTAAAAATAGAGAATGGCATCAAAGCTGGTGCGGCTCCGGTCGAAGAAATACTCGTTCCTCAGTGGGTCGAAGTAGCGCATCCTCTTTTTGGGGTCCCCCAGCAGAGTGTCGGGGAACTGGGAGAGGGTTTTAAGCTGAGTCTCAAAACGCAGCCCAGAGATGTTGATGACCACTCTCTCGCAGCACTCGTGGTCAGCGTCAGGGTCGTACTCGGCCGGGTTCCCCGGATGCGCTGCCGCCTCGTCAGAGGGGTCGCCAGTGGCTACAGTCATTCTGCTGGGGGAGCAGGGAGCCTGCGCTTTTCAGCCAGGAAACTGCTGggagggggacggaggagagggaggggattcAATGCCGTAAAGACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU690938 lncRNA upstream 138 40586130 ~ 40587611 (+) False G606779
TU690928 lncRNA upstream 11256 40576263 ~ 40576493 (+) True G606771
TU690922 lncRNA upstream 23102 40564324 ~ 40564647 (+) True G606765
TU690916 lncRNA upstream 28267 40559040 ~ 40559482 (+) False G606761
TU690912 lncRNA upstream 28339 40559040 ~ 40559410 (+) False G606761
TU690943 lncRNA downstream 2533 40595974 ~ 40596343 (+) True G606782
TU690948 lncRNA downstream 10785 40604226 ~ 40604765 (+) True G606787
TU691179 lncRNA downstream 33948 40627389 ~ 40627683 (+) True G606970
TU691180 lncRNA downstream 34792 40628233 ~ 40628504 (+) True G606971
TU691181 lncRNA downstream 36092 40629533 ~ 40629879 (+) True G606972
XM_036983248.1 mRNA upstream 81296 40499450 ~ 40506453 (+) True LOC110527753
XM_021609250.2 mRNA upstream 81552 40493653 ~ 40506197 (+) False LOC110527753
XM_021609249.2 mRNA upstream 106609 40473766 ~ 40481140 (+) True LOC110527752
XR_002474163.2 mRNA upstream 130007 40438879 ~ 40457742 (+) False LOC110527751
XM_021609223.2 mRNA upstream 273302 40305130 ~ 40314447 (+) True tnnt2b
XM_021608267.2 mRNA downstream 89565 40683006 ~ 40707849 (+) False ngfb
XM_036983249.1 mRNA downstream 105598 40699039 ~ 40707849 (+) True ngfb
XM_021609256.2 mRNA downstream 122486 40715927 ~ 40733584 (+) True tspan2a
XM_021609258.2 mRNA downstream 174838 40768279 ~ 40778071 (+) True LOC110527761
XM_021609260.2 mRNA downstream 185301 40778742 ~ 40783217 (+) False si:ch211-105j21.9
TU690810 other upstream 147117 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 356524 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 363578 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 380852 40206569 ~ 40206897 (+) True G606452
TU690507 other upstream 453299 40126534 ~ 40134450 (+) False G606400
TU691186 other downstream 40740 40634181 ~ 40634439 (+) True G606977
TU692153 other downstream 869383 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1233770 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2227515 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2816950 43410391 ~ 43410806 (+) True G610436

Expression Profile