RNA id: TU691249


Basic Information

Item Value
RNA id TU691249
length 224
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G607034
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40712739 ~ 40712962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaacgagctgagattaggagcatgttcctaatctcagctcattacctgtataaaagacatctgggagccagaaatctttctgattgagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttacaacatttttgacatgcgtttttctggatttttttgctattctgtctctcactgttcaaataaacctatcattaaaattatagacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691199 lncRNA upstream 65632 40646869 ~ 40647107 (+) True G606990
TU691193 lncRNA upstream 73973 40638494 ~ 40638766 (+) True G606984
TU691181 lncRNA upstream 82860 40629533 ~ 40629879 (+) True G606972
TU691180 lncRNA upstream 84235 40628233 ~ 40628504 (+) True G606971
TU691179 lncRNA upstream 85056 40627389 ~ 40627683 (+) True G606970
TU691240 lncRNA downstream 73268 40786230 ~ 40787999 (+) True G607025
TU691310 lncRNA downstream 88124 40801086 ~ 40804767 (+) True G607093
TU691323 lncRNA downstream 111477 40824439 ~ 40824648 (+) True G607106
TU691324 lncRNA downstream 111989 40824951 ~ 40825157 (+) True G607107
TU691328 lncRNA downstream 115178 40828140 ~ 40828444 (+) True G607111
XM_021608267.2 mRNA upstream 4890 40683006 ~ 40707849 (+) False ngfb
XM_036983249.1 mRNA upstream 4890 40699039 ~ 40707849 (+) True ngfb
XM_036983248.1 mRNA upstream 206286 40499450 ~ 40506453 (+) True LOC110527753
XM_021609250.2 mRNA upstream 206542 40493653 ~ 40506197 (+) False LOC110527753
XM_021609249.2 mRNA upstream 231599 40473766 ~ 40481140 (+) True LOC110527752
XM_021609256.2 mRNA downstream 2965 40715927 ~ 40733584 (+) True tspan2a
XM_021609258.2 mRNA downstream 55317 40768279 ~ 40778071 (+) True LOC110527761
XM_021609260.2 mRNA downstream 65780 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983251.1 mRNA downstream 67487 40780449 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983250.1 mRNA downstream 67502 40780464 ~ 40783217 (+) False si:ch211-105j21.9
TU691186 other upstream 78300 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 272107 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 481514 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 488568 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 505842 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 749862 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1114249 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2107994 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2697429 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2871058 43584020 ~ 43584896 (+) True G610563

Expression Profile