RNA id: TU691240


Basic Information

Item Value
RNA id TU691240
length 1747
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G607025
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40786230 ~ 40787999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaggtcgcaaagttcaaggtggccgaatactttcgcaaggcactgtatatattcctAACTTCCTCTTTCTTCAAGTGTTGGATTTTCACCCACAGCGGCCAACTCCAACCCTCCGATGTCCACATATTAACCCATTTTTCCCAGTATAATgccattttttctattttcttttaCAATACATCCCTTCATTTTACTATGATGTCTTACGAGGGTCCTGAACTTCCCTAATTTAAGATTTCTACCGATATTGCCCTAAAAATGTATACTTTACCTAGGAGCATAATGATATTTTGCATTGACTGATTGTGGTTTTTCAGATCCCTTAACAATGCAGGTTGCAGGTCCTGCTGAACACAGACATTAAGACTGAACAACCATTCCTGGGCCTGACTCCAAATTCGAGCCACCAATAGACTGTACCATAAAATATGTTCTATAGATTCTGTGTCCTCATGACAGTCTGCACAAGGCAATATATTGAGCATTCATTTTGTAGCAAGTATTTTATACTATAGCTTAAATTTAAAAGAATTGATTGATGTGTCAAttgttgttttatatatcaattcATAGACCCGATGCCAAGGTATTGAGCCATCAAAAGCCTGTTCTCATATGACTTGAATTTTATACGGTATTGCTGTCAAACACTTTGACTGATACATTTTTCGATTTACACTACTCATTTTAAACCATTTATGATTTTGAATGGGTGGCAGACAGATTCATTCtttaatttcttcaaaaagtaaTGGTCTCTTCCCATTTTGTGGCAGTGCTGCAATGAGTTGGTTATAATTTTGGATTGAGCATATACCTCCATACACTGTTGTTAGTATGCCTGTGTGACATAAGTTTACAATTTTTGTTCATGATTTTTCTGTATCAGTAAATTGGAGTTaatattattctattattattctattatttCCTGTAAATTAGATCTTCCTTTTCTGGAGGATGGAATTGAAATCGTAGCCAACTCTGTAAAAAGGAGGATACTTGAAACAGATtttacactaagtgtacaaaacatgaggaACATTTGCTTTCTCCTTGACagtctgaccaggtgaatccaggttaaagttatgatcccttattaatgtcacctgttaaatccacttcaatcagtgtagataaacggGAGGgcacaggttaaagaaggattgttaagacttgagacatggattgtgtatgtgtgacatttagagggtgaatgggcaagacaaaatatttaaattcctttgaacgggttatggtagtaggtgccaggcaaactagtttgagtgtgtcaagaactgcaacgctgctgggtttttcatgttccacagtttcccgtgtgtaacaagaatggtccacaacccaaaggacatctatccaagttgacacaactgttggaagcattgagtaaacatgggccagcatccctatggaatgctttcgacctacttgtagagtccatgcccgacgaattgagactgttcttaGGACAAAAGGGGTTGAAACTCGATATTATGAAGGTGTTCCTtatgttttctacactcagtgtatatacagtgcattcggaaagtattcagaccccttcactttttacacattttgttacgttacagccgtatacTACAtttgattaaatatgtttttttcctcatcaatctatacaccataccccataatgacaaagtgaaaaaaggtttttagaaatgtttgtaaatgtattcaaaataaaaaacagaaatacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691249 lncRNA upstream 73268 40712739 ~ 40712962 (+) True G607034
TU691199 lncRNA upstream 139123 40646869 ~ 40647107 (+) True G606990
TU691193 lncRNA upstream 147464 40638494 ~ 40638766 (+) True G606984
TU691181 lncRNA upstream 156351 40629533 ~ 40629879 (+) True G606972
TU691180 lncRNA upstream 157726 40628233 ~ 40628504 (+) True G606971
TU691310 lncRNA downstream 13087 40801086 ~ 40804767 (+) True G607093
TU691323 lncRNA downstream 36440 40824439 ~ 40824648 (+) True G607106
TU691324 lncRNA downstream 36952 40824951 ~ 40825157 (+) True G607107
TU691328 lncRNA downstream 40141 40828140 ~ 40828444 (+) True G607111
TU691338 lncRNA downstream 53987 40841986 ~ 40842210 (+) True G607121
XM_021609260.2 mRNA upstream 3013 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983251.1 mRNA upstream 3013 40780449 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983250.1 mRNA upstream 3013 40780464 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609259.2 mRNA upstream 3013 40780765 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609261.2 mRNA upstream 3013 40780765 ~ 40783217 (+) True si:ch211-105j21.9
XM_021609266.2 mRNA downstream 573190 41361189 ~ 41411312 (+) True ppm1j
XM_021609267.2 mRNA downstream 626404 41414403 ~ 41439948 (+) True rhoca
XM_036983254.1 mRNA downstream 697689 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 697689 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 697689 41485688 ~ 41503766 (+) True st7l
TU691186 other upstream 151791 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 345598 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 555005 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 562059 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 579333 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 674825 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1039212 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2032957 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2622392 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2796021 43584020 ~ 43584896 (+) True G610563

Expression Profile