RNA id: TU691488



Basic Information


Item Value
RNA id TU691488
length 217
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G607263
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40845644 ~ 40845860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgtgaaaaaggttagaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaagattgcaaagttcaagggggccgaatactttcgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU691338 lncRNA upstream 3434 40841986 ~ 40842210 (+) True G607121
TU691328 lncRNA upstream 17200 40828140 ~ 40828444 (+) True G607111
TU691324 lncRNA upstream 20487 40824951 ~ 40825157 (+) True G607107
TU691323 lncRNA upstream 20996 40824439 ~ 40824648 (+) True G607106
TU691310 lncRNA upstream 40877 40801086 ~ 40804767 (+) True G607093
TU691489 lncRNA downstream 994 40846854 ~ 40847105 (+) True G607264
TU691526 lncRNA downstream 23828 40869688 ~ 40870001 (+) True G607301
TU691527 lncRNA downstream 25253 40871113 ~ 40871504 (+) True G607302
TU691613 lncRNA downstream 87276 40933136 ~ 40933343 (+) True G607386
TU691683 lncRNA downstream 134909 40980769 ~ 40981105 (+) True G607454
XM_021609260.2 mRNA upstream 62427 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609266.2 mRNA downstream 515329 41361189 ~ 41411312 (+) True ppm1j
XM_021609267.2 mRNA downstream 568543 41414403 ~ 41439948 (+) True rhoca
XM_036983254.1 mRNA downstream 639828 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 639828 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 639828 41485688 ~ 41503766 (+) True st7l
TU691186 other upstream 211205 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 405012 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 614419 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 621473 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 638747 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 616964 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 981351 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1975096 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2564531 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2738160 43584020 ~ 43584896 (+) True G610563

Expression Profile