RNA id: TU691736


Basic Information

Item Value
RNA id TU691736
length 360
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G607506
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41019328 ~ 41019687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcttcacaacagtgtctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttagcggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcactagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691701 lncRNA upstream 27902 40991118 ~ 40991426 (+) True G607472
TU691683 lncRNA upstream 38223 40980769 ~ 40981105 (+) True G607454
TU691613 lncRNA upstream 85985 40933136 ~ 40933343 (+) True G607386
TU691527 lncRNA upstream 147824 40871113 ~ 40871504 (+) True G607302
TU691526 lncRNA upstream 149327 40869688 ~ 40870001 (+) True G607301
TU691739 lncRNA downstream 940 41020627 ~ 41020885 (+) True G607509
TU691749 lncRNA downstream 11614 41031301 ~ 41031693 (+) True G607519
TU691764 lncRNA downstream 20938 41040625 ~ 41040955 (+) True G607534
TU691770 lncRNA downstream 25939 41045626 ~ 41045826 (+) True G607540
TU691807 lncRNA downstream 51383 41071070 ~ 41071664 (+) True G607577
XM_021609260.2 mRNA upstream 236111 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609266.2 mRNA downstream 341502 41361189 ~ 41411312 (+) True ppm1j
XM_021609267.2 mRNA downstream 394716 41414403 ~ 41439948 (+) True rhoca
XM_036983254.1 mRNA downstream 466001 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 466001 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 466001 41485688 ~ 41503766 (+) True st7l
TU691186 other upstream 384889 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 578696 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 788103 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 795157 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 812431 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 443137 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 807524 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1801269 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2390704 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2564333 43584020 ~ 43584896 (+) True G610563

Expression Profile