RNA id: TU691784


Basic Information

Item Value
RNA id TU691784
length 243
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G607554
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41052620 ~ 41052862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtattcactaaggtataaTGTTCAAGAGGCCTCAATACTGAATGCAATGTATATACATAAGCATCATGTTCCTTGATGCAAAtatcaagtttcaagttttaatgtcacgtgcacaagtacagtaaaATGCCTTTCATTCAAGCTCTAAAGCCAACAATGCAGTgatcaatatcaatgtagtacAACATTTTTTACATAAGGTAGAACAATAACACATGGGAAATCTAATtgagaaataagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691732 lncRNA downstream 35365 41017053 ~ 41017255 (-) True G607502
TU691724 lncRNA downstream 41135 41011180 ~ 41011485 (-) True G607494
TU691718 lncRNA downstream 46198 40999634 ~ 41006422 (-) True G607488
TU691711 lncRNA downstream 54247 40998052 ~ 40998373 (-) True G607482
TU691707 lncRNA downstream 57923 40994327 ~ 40994697 (-) True G607478
TU691798 lncRNA upstream 10046 41062908 ~ 41063157 (-) True G607568
TU691845 lncRNA upstream 46517 41099379 ~ 41099667 (-) True G607615
TU691882 lncRNA upstream 70739 41123601 ~ 41123803 (-) True G607650
TU692195 lncRNA upstream 108399 41161261 ~ 41163078 (-) True G607933
TU692336 lncRNA upstream 361552 41414414 ~ 41439945 (-) True G608069
XM_021609262.2 mRNA downstream 236172 40804053 ~ 40816448 (-) False slc16a1a
XM_021609263.2 mRNA downstream 236172 40804053 ~ 40816448 (-) True slc16a1a
NM_001124543.1 mRNA downstream 296401 40754249 ~ 40756219 (-) True tshba
XM_021609255.2 mRNA downstream 303357 40733892 ~ 40749263 (-) True slc25a55a
XM_021609254.2 mRNA downstream 440571 40603451 ~ 40612049 (-) False LOC110527758
XM_021609264.2 mRNA upstream 103803 41156665 ~ 41348913 (-) False LOC110527764
XM_021609265.2 mRNA upstream 104701 41157563 ~ 41348915 (-) False LOC110527764
XM_021609268.2 mRNA upstream 392088 41444950 ~ 41467330 (-) False mov10a
XM_036983253.1 mRNA upstream 392088 41444950 ~ 41467330 (-) True mov10a
XM_021609272.2 mRNA upstream 416704 41469566 ~ 41485470 (-) True capza1a
TU691182 other downstream 422740 40629249 ~ 40629880 (-) True G606973
TU690660 other downstream 828453 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 1211289 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 1983792 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 2413220 38602330 ~ 38639400 (-) True G604484
TU692184 other upstream 103808 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 103808 41156670 ~ 41348899 (-) False LOC110527764
TU692186 other upstream 103808 41156670 ~ 41348899 (-) False LOC110527764
TU692187 other upstream 103808 41156670 ~ 41348899 (-) False LOC110527764
TU692189 other upstream 103808 41156670 ~ 41348899 (-) True LOC110527764

Expression Profile