RNA id: TU691926



Basic Information


Item Value
RNA id TU691926
length 1027
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G607693
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41156692 ~ 41157761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATAATACTGACACTTTTACTCAATGTTGGTCACCAGGCTATTAAAAACAGATATTAAAACAGTTGGAGTTCAGCTTAATGTCATTTTAATTGGTTTGTTGAAACCATGGTGCCTTTAATTCAAGCACTGCAACATAGTAGTTAGTACTATTTTTCACTCTGGCATCTTCTTTGATGTCTCAAGTCTTCAAAAGCAGACCTGACAGTCCAACAGAATTACTAAAACCAAACACttaatgctttaaaaaaaatcaaaaacctTAAAAAGAAGAGATGTCTGCTTCATACGGTTAAAAATAAATGGATATGCTTATGATCTAAATCTCGAACACAAACACTTGGTTTTGGAGTCATTGAGCTTCTCTGTGGCAAAAAGAGGAAAAATATTTGAAAATGTCACGTCACATGTTTCGCATTAAGGTTTATCTTGCTTGCATAATCCACAGTTTTTGTTTTTACTGAATAAATACCTTGCAGGTTTGGATCTCCTACTGTAGCAGTTCATTGGAGGAAAAAACATAAACAATAATGGCTAGGAATTGGATCTAATCAGTAGTCCAGTAGTCTGGATAAGGTGGTTCTATGGGATCTAATCAGCAGTCCAGTTGTCTGGATAGGTGGTTCTATGGGATCTGATCAGTAGTCCAGTAGTCTGGATAGGTGGTTCTATGGGATCTAATCAGTAGTCCAGTAGTCTGGATAGGTGGTTCTAATCAGTAGTCCAGTGTCTGGATAGGTGGTTCTATGAGATCTAATCAGTAGTCCATTAGTCTGGATAGGTGGTTCTATGGGATCTAATCAGTAGTCTGGATAGGTGGTTCTATGGGATCTCCAAGTCAAGTCTCTGCTCTGCATCCATACAGTGGAATTTCAGTGTTTCCTTTTTTTTCCCTTATTGGTCCCTGGTTCCATCCCACAATCCTTCAATACATAGTCTTCACATCCAAGAAGTCCCTGTGGTTTCTGTCAAGGAAGAGATGACTGATGCCAAGTCTTCAGATCCAGGACAGACCGCACTATCGTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU691911 lncRNA upstream 12070 41144403 ~ 41144622 (+) True G607679
TU691842 lncRNA upstream 59054 41097375 ~ 41097638 (+) True G607612
TU691835 lncRNA upstream 64207 41092272 ~ 41092485 (+) True G607605
TU691826 lncRNA upstream 70855 41085262 ~ 41085837 (+) True G607596
TU691807 lncRNA upstream 85028 41071070 ~ 41071664 (+) True G607577
TU692044 lncRNA downstream 154794 41312555 ~ 41314869 (+) True G607805
TU692132 lncRNA downstream 285781 41443542 ~ 41445386 (+) False G607890
TU692135 lncRNA downstream 285781 41443542 ~ 41444260 (+) False G607890
TU692131 lncRNA downstream 286255 41444016 ~ 41445386 (+) False G607890
TU692133 lncRNA downstream 286255 41444016 ~ 41444260 (+) True G607890
XM_021609260.2 mRNA upstream 373475 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609266.2 mRNA downstream 203428 41361189 ~ 41411312 (+) True ppm1j
XM_021609267.2 mRNA downstream 256642 41414403 ~ 41439948 (+) True rhoca
XM_036983254.1 mRNA downstream 327927 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 327927 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 327927 41485688 ~ 41503766 (+) True st7l
TU691186 other upstream 522253 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 716060 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 925467 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 932521 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 949795 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 305063 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 669450 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1663195 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2252630 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2426259 43584020 ~ 43584896 (+) True G610563

Expression Profile