RNA id: TU692135



Basic Information


Item Value
RNA id TU692135
length 719
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G607890
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41443542 ~ 41445386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tattgtgtgtagattgatgtgagaaaaaaaaacaatttcatccattttagaataaggctgtaacgtaacaaaaagtggaataagtcaaggggtctgaatactttcacagTGCACTGTATAAGACCTGTTCAAATTATCACTTTAACGCTCAACATCGCCACTTCATATGCACACTCGCTCCgaaatgggaaaaatatcctttctgttttattcagctaagttcaattatattcttcttactataaaatcctataatataaaataatggaaTGGGACTTAAAAGCATTTCTTGTCTAcaaaatgaacaagcctacagcctatagccagataacatactcatattaaattgtctgtctgtaatggtgtGCCCCAGGGCTCTGTACTTTGTcccctcttattcactatttctATAATTAATTTAGACAAAAATTTGAAAAATGAGTAACTTcacttttatgctgatgatactgttatttattgttgtgcctcgtctctcacaaaagctttccagaacttgcaaactaCTTTTTATACAGTTCAACATACCATACCAACATACTAAACTAATGGTGTAAAGCAAGAAATAGATCTGTGAaactttcacctattactacctgtcagggcaatgaAATTGAGagtgtaacctcatataaatatgttggaattttaattgattatggcctctcttttaaattgcatattcaacaacttgcAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU692044 lncRNA upstream 128673 41312555 ~ 41314869 (+) True G607805
TU691926 lncRNA upstream 285781 41156692 ~ 41157761 (+) False G607693
TU691927 lncRNA upstream 285781 41156692 ~ 41157761 (+) True G607693
TU691911 lncRNA upstream 298920 41144403 ~ 41144622 (+) True G607679
TU691842 lncRNA upstream 345904 41097375 ~ 41097638 (+) True G607612
TU692140 lncRNA downstream 1609 41445869 ~ 41446193 (+) True G607891
TU692141 lncRNA downstream 2036 41446296 ~ 41446571 (+) True G607892
TU692157 lncRNA downstream 24358 41468618 ~ 41468856 (+) True G607908
TU692167 lncRNA downstream 24836 41469096 ~ 41484386 (+) True G607910
TU692441 lncRNA downstream 62559 41506819 ~ 41507211 (+) True G608166
XM_021609267.2 mRNA upstream 3594 41414403 ~ 41439948 (+) True rhoca
XM_021609266.2 mRNA upstream 32230 41361189 ~ 41411312 (+) True ppm1j
XM_036983250.1 mRNA upstream 660325 40780464 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983254.1 mRNA downstream 41428 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 41428 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 41428 41485688 ~ 41503766 (+) True st7l
XR_005052707.1 mRNA downstream 73525 41517785 ~ 41519305 (+) False LOC118965381
XM_036984430.1 mRNA downstream 171324 41615584 ~ 41616729 (+) True LOC118965355
TU691186 other upstream 809103 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1002910 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1212317 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1219371 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 1236645 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 18564 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 382951 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1376696 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1966131 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2139760 43584020 ~ 43584896 (+) True G610563

Expression Profile