RNA id: TU692153


Basic Information

Item Value
RNA id TU692153
length 346
RNA type TUCP
GC content 0.51
exon number 1
gene id G607904
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41462824 ~ 41463169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacccaaaacacacggccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctgcagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaagttctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692141 lncRNA upstream 16253 41446296 ~ 41446571 (+) True G607892
TU692140 lncRNA upstream 16631 41445869 ~ 41446193 (+) True G607891
TU692132 lncRNA upstream 17438 41443542 ~ 41445386 (+) False G607890
TU692131 lncRNA upstream 17438 41444016 ~ 41445386 (+) False G607890
TU692135 lncRNA upstream 18564 41443542 ~ 41444260 (+) False G607890
TU692157 lncRNA downstream 5449 41468618 ~ 41468856 (+) True G607908
TU692167 lncRNA downstream 5927 41469096 ~ 41484386 (+) True G607910
TU692441 lncRNA downstream 43650 41506819 ~ 41507211 (+) True G608166
TU692444 lncRNA downstream 45284 41508453 ~ 41508652 (+) True G608169
TU692445 lncRNA downstream 45728 41508897 ~ 41509173 (+) True G608170
XM_021609267.2 mRNA upstream 22876 41414403 ~ 41439948 (+) True rhoca
XM_021609266.2 mRNA upstream 51512 41361189 ~ 41411312 (+) True ppm1j
XM_021609260.2 mRNA upstream 679607 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983251.1 mRNA upstream 679607 40780449 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983250.1 mRNA upstream 679607 40780464 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983254.1 mRNA downstream 22519 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 22519 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 22519 41485688 ~ 41503766 (+) True st7l
XR_005052707.1 mRNA downstream 54616 41517785 ~ 41519305 (+) False LOC118965381
XM_036984430.1 mRNA downstream 152415 41615584 ~ 41616729 (+) True LOC118965355
TU691186 other upstream 828385 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1022192 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1231599 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1238653 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 1255927 40206569 ~ 40206897 (+) True G606452
TU692673 other downstream 364042 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1357787 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1947222 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2120851 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 2365835 43829004 ~ 43831880 (+) False G610622

Expression Profile