RNA id: TU692594


Basic Information

Item Value
RNA id TU692594
length 233
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G608315
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41626717 ~ 41626949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaactgcctcgttcaggggcagaacaacagattttcaccttgtcagctcgggggatccaatcttgcaaccttactgttaactagtccaacgcaataacgacctgcctctctctcgttgcactccacaaggagactgcctgttacgcaaatgcagtaagccaagataagttgctagctagaattaaactactcttataaaaacaatcaatcataatcactagttaactacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692456 lncRNA upstream 107384 41518076 ~ 41519333 (+) True LOC118965381
TU692450 lncRNA upstream 114675 41511802 ~ 41512042 (+) True G608175
TU692449 lncRNA upstream 115165 41511326 ~ 41511552 (+) True G608174
TU692445 lncRNA upstream 117544 41508897 ~ 41509173 (+) True G608170
TU692444 lncRNA upstream 118065 41508453 ~ 41508652 (+) True G608169
TU692595 lncRNA downstream 354 41627303 ~ 41627621 (+) True G608316
TU692653 lncRNA downstream 69253 41696202 ~ 41696405 (+) True G608371
TU692665 lncRNA downstream 88899 41715848 ~ 41716087 (+) True G608383
TU692672 lncRNA downstream 181204 41808153 ~ 41817714 (+) True G608389
TU692745 lncRNA downstream 217425 41844374 ~ 41846862 (+) True G608456
XM_036984430.1 mRNA upstream 9988 41615584 ~ 41616729 (+) True LOC118965355
XR_005052707.1 mRNA upstream 107412 41517785 ~ 41519305 (+) False LOC118965381
XM_021609270.2 mRNA upstream 122951 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA upstream 122951 41485688 ~ 41503766 (+) True st7l
XM_036983254.1 mRNA upstream 129541 41485688 ~ 41497176 (+) False st7l
XM_036983255.1 mRNA downstream 34585 41661534 ~ 41728773 (+) True LOC110527773
XM_021609277.2 mRNA downstream 115612 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA downstream 123644 41750593 ~ 41754877 (+) False LOC110527774
XM_036983257.1 mRNA downstream 123649 41750598 ~ 41754877 (+) True LOC110527774
XM_036983261.1 mRNA downstream 317588 41944537 ~ 41956332 (+) False LOC110527781
TU692153 other upstream 163548 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 992278 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1186085 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1395492 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1402546 40223175 ~ 40224171 (+) True G606464
TU692673 other downstream 200262 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1194007 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1783442 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1957071 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 2202055 43829004 ~ 43831880 (+) False G610622

Expression Profile