RNA id: TU692653


Basic Information

Item Value
RNA id TU692653
length 204
lncRNA type intronic
GC content 0.39
exon number 1
gene id G608371
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41696202 ~ 41696405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAATGCCCTTTCCCTTAATCCTGGTTCATGTGTCAACAATCAACTGCAAGGTATGAGCAGTCAGCAGATCACACAACAAGTAGGTTACTCAGAAGACAGTCAGCACTTAAAGTATATGGCCCTAGCTAAcaaaaagacagtactagatAACAACAGATTAAGACAAAAATTATACTTATCACTTCTGGAGaaatcaggagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692595 lncRNA upstream 68581 41627303 ~ 41627621 (+) True G608316
TU692594 lncRNA upstream 69253 41626717 ~ 41626949 (+) True G608315
TU692456 lncRNA upstream 176869 41518076 ~ 41519333 (+) True LOC118965381
TU692450 lncRNA upstream 184160 41511802 ~ 41512042 (+) True G608175
TU692449 lncRNA upstream 184650 41511326 ~ 41511552 (+) True G608174
TU692665 lncRNA downstream 19443 41715848 ~ 41716087 (+) True G608383
TU692672 lncRNA downstream 111748 41808153 ~ 41817714 (+) True G608389
TU692745 lncRNA downstream 147969 41844374 ~ 41846862 (+) True G608456
TU692731 lncRNA downstream 178804 41875209 ~ 41877230 (+) True G608446
TU693457 lncRNA downstream 568031 42264436 ~ 42264667 (+) True G609098
XM_036984430.1 mRNA upstream 79473 41615584 ~ 41616729 (+) True LOC118965355
XR_005052707.1 mRNA upstream 176897 41517785 ~ 41519305 (+) False LOC118965381
XM_021609270.2 mRNA upstream 192436 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA upstream 192436 41485688 ~ 41503766 (+) True st7l
XM_036983254.1 mRNA upstream 199026 41485688 ~ 41497176 (+) False st7l
XM_021609277.2 mRNA downstream 46156 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA downstream 54188 41750593 ~ 41754877 (+) False LOC110527774
XM_036983257.1 mRNA downstream 54193 41750598 ~ 41754877 (+) True LOC110527774
XM_036983261.1 mRNA downstream 248132 41944537 ~ 41956332 (+) False LOC110527781
XM_036983262.1 mRNA downstream 248132 41944537 ~ 41956332 (+) False LOC110527781
TU692153 other upstream 233033 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1061763 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1255570 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1464977 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1472031 40223175 ~ 40224171 (+) True G606464
TU692673 other downstream 130806 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1124551 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1713986 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1887615 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 2132599 43829004 ~ 43831880 (+) False G610622

Expression Profile