RNA id: TU692673



Basic Information


Item Value
RNA id TU692673
length 1162
RNA type TUCP
GC content 0.45
exon number 4
gene id G608390
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41827211 ~ 41830808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCAAATGGgttttacctggttaaataaaaggttcaataaattaaataaaacatttgcacTCCCTATAACCCTTCATTGTAGCCCTGTAAATCAACTACAGAATAAGACAGCATTCCTCAGAGAGGCACACTGACCAGTTGGGAACTGTGACGAAGCAAATCTAGTGAGCAGGATTCCAGCTCCCTCTATCAATGCCAGTAGTATACCTCCCATTGCAGCAGAGCCTACCATGGCCACTGGTCCATTTCTTGCTGCAAGGATGGCTCCAGTCATGGCCCCGCTTGTGATGGAGTTCCAGGGGTCCTCTTTCCCCCGTACCTTTACCAACCCACAGTCAATCATGGAGAAGAGGCCTCCCCATACTGCAAAGCTAcCCCCCAACTGTGGGGCTCTGGTCTTGATGGCTGTCATGCTACCTTTCAATCTGTGGCTCATCCCTGCAGGTGAATTTCTAAAGCCCTTGACAGCCTGGAAGATCCCTCCTCCAATGGCCCCCATGGTGAAAGCACCCCCACAGTCGTCCACGATTCTCCACGGACTGAAAAAACACAGTATGGTCAAtgaacacacacaggcagataAACACACAGGTCTTTACCAGTTTGCTTCAGGGTCATAGGTGCATTTAAATGCATGATACATAGATAGCTAGTGTAAAGTAGCCTGAAGGCTTGTGTCAACTGGCTATTAAAAGTGTGTGATTGCCACCTAGTAATGTTAGATAACGGGTAGGCTAGTGTTGCAATGTACACCGGTACCACGGTAATATCACGGTACCAAAACGTCATGATATTTATAACAACATTTTAGAATACCATAGTACCGTTTTATATGACACTACCACACTTTTCTGCCCTACCGATTCAAAGATCCAGCTGTCGCCTGTGATAAAAATTTGTTAAGCAACTAGTCTCTTGTATGCACCAGTCCAAAAATGCCCACATCACTTTCAGGCGCAGCTCACGTGTGGCAGCTGTGATCAGCCAGACTCATCCCCTACCAGTCTTCACTCAAAGGTCCATTCTTCCTGcgcatctacagtgcattcggaaattattcagacccctagactttttccacataattGTTGTTATtcgaaaattgattaaattgtttatgATCCTCATCaatacacaataccccttaatgacaaagcaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU692672 lncRNA upstream 9497 41808153 ~ 41817714 (+) True G608389
TU692665 lncRNA upstream 111124 41715848 ~ 41716087 (+) True G608383
TU692653 lncRNA upstream 130806 41696202 ~ 41696405 (+) True G608371
TU692595 lncRNA upstream 199590 41627303 ~ 41627621 (+) True G608316
TU692594 lncRNA upstream 200262 41626717 ~ 41626949 (+) True G608315
TU692745 lncRNA downstream 13566 41844374 ~ 41846862 (+) True G608456
TU692731 lncRNA downstream 44401 41875209 ~ 41877230 (+) True G608446
TU693457 lncRNA downstream 433628 42264436 ~ 42264667 (+) True G609098
TU693458 lncRNA downstream 434473 42265281 ~ 42265618 (+) True G609099
TU693467 lncRNA downstream 443009 42273817 ~ 42274036 (+) True G609108
XM_021609277.2 mRNA upstream 72334 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA upstream 72334 41750593 ~ 41754877 (+) False LOC110527774
XM_036983257.1 mRNA upstream 72334 41750598 ~ 41754877 (+) True LOC110527774
XM_036983255.1 mRNA upstream 98438 41661534 ~ 41728773 (+) True LOC110527773
XM_036984430.1 mRNA upstream 210482 41615584 ~ 41616729 (+) True LOC118965355
XM_036983261.1 mRNA downstream 113729 41944537 ~ 41956332 (+) False LOC110527781
XM_036983262.1 mRNA downstream 113729 41944537 ~ 41956332 (+) False LOC110527781
XM_036983263.1 mRNA downstream 113729 41944537 ~ 41956332 (+) False LOC110527781
XM_036983264.1 mRNA downstream 113729 41944537 ~ 41956332 (+) False LOC110527781
XM_036983266.1 mRNA downstream 113729 41944537 ~ 41956332 (+) False LOC110527781
TU692153 other upstream 364042 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1192772 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1386579 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1595986 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1603040 40223175 ~ 40224171 (+) True G606464
TU693833 other downstream 990148 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1579583 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1753212 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1998196 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 2171816 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile