RNA id: TU692745


Basic Information

Item Value
RNA id TU692745
length 2447
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G608456
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41844374 ~ 41846862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagaaaaaaaacatagcACTTATTGTATTACAATGTCTTACCATCCATTAAACAACAGACAACCAACAAGTAAGAGCTGGGAACTGTTCTACTAGTAACAAATGTAATTTACGCTCTGGTAAAatgtacaacaaaaaaaaaaaatgtgcattcAAAATTTAGAAAGTTTTTTTCAATTATGTGCTTGTGAActtgtgattttctgtatttctgCTTACATTTTTACCTAAAATGTCATAATAGATGTGAACATGTTTAAtcaaataatacaaaaacaattgTACTTTTAAATTTCTTTACTGAGACAATTGATCCAACATTCAATTTCTTTGttaggaaaagtatgtgaacctctaGATTAATCATCTGCATTAAGTGTATTTAAGTAGTCAAAAGTATAGTATTTGGTTCCTAGCAtgtaatgactacatcaagcttgtgactacaaaacctctggatgcatttgcagtttgtttttgtCGGGTTTTGGATGATGTTCTTCCCAATAGTAACCGAATGGGGAATGATGACTGgagtatttgtatttttaattgaGTAGATAAGACGTTTGTAACCTTCTCACTTAACATCATTCATGATCTATTCATGATTATCCATCATGgcggtagcatccacatgaatgtggAAACGTTCAAAAACAGGCTCTATTCTTACCTaaaaataaaagtgactccaaaaagACAAGCCGTCACGTTTCTGTTGGGCAAAACATAAACCAAAACACTTttaaaacaaactgcaaatgcatcccaGGAGTTTATAAAAAGTCACAAACTTGATGTAGTCactgcatgctaggaatatgggaccgaatactacacttttgactactttaatacacttaATTCAGATGATTAATCTAagaggttcacatactttttccaacgaCGAAATGTAATGTTGGATCAATTGTCTCAATAAAGAAATTAAAGGGTACAATtgtttttgtgttatttgtttaAAATCAGGGTCAACTTGATCTATTAGTAAGACTCACACTCTAGGTCAAATGTATGCAGAAATTCTAAACAGTTCAAACGTTCTCAACCCACAACAtgtacactttacatgttgataAAAAACATTACAGTAATCCAATTCAAATAATAAAATATCAATAGGGTTTATGAATAAGAGTATGTCACTGTTTTACATTGACACGTTTAAACACGGGCTGGCCAAGAAGAATCTGTATATCTATTGCACGATTGCTTCATCATTCCTCTCTGAACAAATATGCTAAAACTCTCAAAATGATTCCATAGAAAAATCTGTTAAGAATCTCAGGGTGGGTAAAATAGAATGTCACCTGATCCGATACATTTGACCTGGGACGAGCCCTTCAGTGGTTACTAATAGTAAACTGTACAACATGCTCAACACGTACAGTTCCAACATCCTACAAGGGGCACAACAATGGCTCAGAGAAAAAGATCATAGCCAAAAATAAAGACAGTGTGAGGAAATGCTCGAAGCATTTCATggtcaaacatttaaaaaaaaaagttgtgtcTGTTACAACAATAATAAGACATGTTCAGATATTGTCGACAAAATATGTCTTGAAACAGTTCCTTGAATTCACGATGACACGAGGCTCAGATGTGTTATTTAAGTTAAATATTGGCTGGATATATTACTGAAAATTAACATTCATACAGATTCCACTAATAAATAAACGTATTTCTGACATCTTGAGTACCATGACAAATTGGTATGTAGCAGAACATGTACTGTCTAACTGACGTTCGAATATACATAAAGTAAATGTTAATATATTACAGAAGACAAGCTGAGCATGAGTTAACAAAGAAATCCCCACAGAGAGCTTCTGAGCATTCTGACTTTAATACAACAGATAAGAGTCAACCAGCTCTCATGCACACCCTGTTATCTGCAGGTATGACCCTCGCTCTGTCCACTACCGGATTAAAGCCAAGCAAACATGTGAGAGACAGACATTCACCATTCCTCAAGTCAAATGTCTTAAGCAGAGAATTCATGTCAAACAAAGCATGTGACCTTGAAGAACGCCGTCTTGGGTTACGCTAATTGTGAGGGATAGATGTCAGAGTAAGTGCACGGATGATGGTGGGTTAACCTCACTTTGGAATGGTGTGACATTTTCCACATTAGACTGTCAGTAGGAATCAAGTTCAGTgccaggacagacaggagaacCCCCAACTCAGCATATGCTCCTGTTCCTTTAAAGGACGTAGAAAATAAAGGACAATAAAGTGCCTCTGGTTATCTTTCACGAGGCAACCGTTAGGAGAGCCGGAGCCATGGTTGCCTTCTTGTGGTCGCCTTCTCATCTTGACGCAGTGCTTAGTTTGTTTCTCCTCTCCATGTACAGTACTTGCTTTCATCCCATCAGTGACCGGGGTGGGGAGTGTACTGTGGCGGGGAGTAAGGAGGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692672 lncRNA upstream 26660 41808153 ~ 41817714 (+) True G608389
TU692665 lncRNA upstream 128287 41715848 ~ 41716087 (+) True G608383
TU692653 lncRNA upstream 147969 41696202 ~ 41696405 (+) True G608371
TU692595 lncRNA upstream 216753 41627303 ~ 41627621 (+) True G608316
TU692594 lncRNA upstream 217425 41626717 ~ 41626949 (+) True G608315
TU692731 lncRNA downstream 28347 41875209 ~ 41877230 (+) True G608446
TU693457 lncRNA downstream 417574 42264436 ~ 42264667 (+) True G609098
TU693458 lncRNA downstream 418419 42265281 ~ 42265618 (+) True G609099
TU693467 lncRNA downstream 426955 42273817 ~ 42274036 (+) True G609108
TU693472 lncRNA downstream 428964 42275826 ~ 42276063 (+) True G609113
XM_021609277.2 mRNA upstream 89497 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA upstream 89497 41750593 ~ 41754877 (+) False LOC110527774
XM_036983257.1 mRNA upstream 89497 41750598 ~ 41754877 (+) True LOC110527774
XM_036983255.1 mRNA upstream 115601 41661534 ~ 41728773 (+) True LOC110527773
XM_036984430.1 mRNA upstream 227645 41615584 ~ 41616729 (+) True LOC118965355
XM_036983261.1 mRNA downstream 97675 41944537 ~ 41956332 (+) False LOC110527781
XM_036983262.1 mRNA downstream 97675 41944537 ~ 41956332 (+) False LOC110527781
XM_036983263.1 mRNA downstream 97675 41944537 ~ 41956332 (+) False LOC110527781
XM_036983264.1 mRNA downstream 97675 41944537 ~ 41956332 (+) False LOC110527781
XM_036983266.1 mRNA downstream 97675 41944537 ~ 41956332 (+) False LOC110527781
TU692673 other upstream 13566 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 381205 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1209935 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1403742 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1613149 40230885 ~ 40231225 (+) True G606469
TU693833 other downstream 974094 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1563529 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1737158 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1982142 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 2155762 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile